Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq2 159 2e-34 >seq2 Length=4222574 Score = 159 bits (176), Expect = 2e-34 Identities = 319/473 (67%), Gaps = 0/473 (0%) Strand=Plus/Minus Query 25887 TATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTG 25946 ||| |||||| | || |||||| |||| ||||| | |||||| | ||| | Sbjct 4214831 TATGTGGACACATTAGTGACCAATCTTCATTGGCTTCAACACGTTTCATAAAAAGATCAG 4214772 Query 25947 GAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTT 26006 ||||||||| |||| |||| | ||| | ||| | ||| || ||||| ||| |||| Sbjct 4214771 GAATCCACAATGCAAAAAACAGATCGCGCGCCCGATGTTCCTCCTTTCCAGTATTTTTTT 4214712 Query 26007 TTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTAC 26066 | || || || || || || | |||||||||||| || ||||| || |||||||| | Sbjct 4214711 TAAGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCTAAGTAAATAGCAAATGCTC 4214652 Query 26067 CTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACA 26126 | |||||| || || || ||||| || || | ||| | ||| |||||| | |||| Sbjct 4214651 CAGGTCTTTTACCACCGCCCTGATCGACATAACGTGCCACATTATTAAAAACTCTTAACA 4214592 Query 26127 TTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAA 26186 |||| ||||||||| ||||| ||||| || | | ||| | |||| | | || || Sbjct 4214591 TTGGTACTAATCCATTTGAAGTACCGTTCGTTCCACAAATTGATGTTCCTTTAGCTCGAA 4214532 Query 26187 TATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAA 26246 || |||| ||| | || || ||||| ||| | |||||||| ||| || | || Sbjct 4214531 TACAGTGAACATTCAGTCCAATGCCACCTGCCGACTTTGAAATCATTGCGCATTGCTCAA 4214472 Query 26247 CTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATA 26306 ||| | ||||| |||| || |||| || ||| | ||| || ||||| | Sbjct 4214471 CTGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAAGAGAAAGCATGAAGACA 4214412 Query 26307 ATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAA 26359 |||| | | | |||| ||| | ||| | || |||| ||||||||| || Sbjct 4214411 ATTGTGGACGGTTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAA 4214359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253015165151975