Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq6 104 3e-16 seq3 96.9 4e-14 seq4 86.0 8e-11 >seq6 Length=21059900 Score = 104 bits (114), Expect = 3e-16 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 ||||||| ||||| |||||| | | ||||| || ||| | || || ||| || Sbjct 12228813 AGAAGCGTACCGATGACATCACATCCTGGGATGCAGATTTTCTTAAAGTAGACCAGGGCA 12228754 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | || || || ||||| | ||||||||||| | || |||||| |||| || | Sbjct 12228753 CTCTATTCGAACTGATCTTAGCCGCCAACTATTTGGATATCAAGGGCTTGCTGGAATTAA 12228694 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| | |||||||||||||| ||||| ||| | |||||||| || ||||| || | Sbjct 12228693 CCTGCAAGACGGTGGCCAACATGATTAAGGGGAAGACACCCGAGGACATTCGCAAAACGT 12228634 Query 1592286 TTAACATCAA 1592295 ||||||| || Sbjct 12228633 TTAACATTAA 12228624 Score = 86.0 bits (94), Expect = 8e-11 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 507111 TCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACTTTACCG 507170 |||||||||||||||| | ||||| || |||| ||||| ||||| ||| |||| | | Sbjct 2976849 TCAAGGGCAAGGAGGGGCGTATCCGTGGTAATTTGATGGGAAAGCGTGTCGACTTCTCTG 2976908 Query 507171 CGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGTGCCCTATG 507230 | || | ||||||| ||||| ||| | | ||| ||| |||| |||||||| | Sbjct 2976909 CACGGACTGTCATCACGCCCGATCCCAATTTGCGCATCGACCAGGTCGGCGTGCCACGTT 2976968 Query 507231 AGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGACGCC 507270 ||| | ||| || ||||| || |||| |||||||| Sbjct 2976969 CGATAGCACAGAACCTAACCTTCCCGGAGCTGGTGACGCC 2977008 >seq3 Length=21835025 Score = 96.9 bits (106), Expect = 4e-14 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 1852472 TCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGG 1852531 |||| ||| |||||||| ||| |||||| | | |||||||| |||||||| || Sbjct 21695787 TCGAGCAGCGGCCACGGCGCCTTCATGTTGTCCAAATAGGCGTGCAGATCGGCAAACAGT 21695846 Query 1852532 ATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAGATGGGCACAAAGTAG 1852591 || | ||| ||||||||| | | ||||| || | ||| | ||||||||||| ||| Sbjct 21695847 ATTGTCACCTCACAGCCGGCTTTCAAGAAGTCCGCAATCTTGGACATGGGCACAAAATAG 21695906 Query 1852592 CCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATAT 1852632 | | || || || ||||||| |||||||||||| || || Sbjct 21695907 GCGACATGTGGCTTTCCCGTCGTCGCCGTGCCCCAGTAGAT 21695947 >seq4 Length=22154029 Score = 86.0 bits (94), Expect = 8e-11 Identities = 197/294 (67%), Gaps = 6/294 (2%) Strand=Plus/Plus Query 869155 GACGGCAAAGAGGGCACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGC 869214 ||| |||||| ||| |||| | || |||||||| ||||| || ||| || | Sbjct 3240614 GACAGCAAAGT---CACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAACGT 3240670 Query 869215 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAA 869274 || || ||||| || || |||||||| ||||||||||| | | || || || ||| Sbjct 3240671 CAGACCTGGCATCAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCGCTGAA 3240730 Query 869275 AAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTC 869334 ||||| ||||| ||||| ||||| |||| | | |||| ||||| ||| ||| || Sbjct 3240731 GAAGATTCCCTCCACGGCAGCAAACGCGATAATTCTCTCGCCAAAG--TTCGCCGCCTTC 3240788 Query 869335 CTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGAT 869394 || ||||| | |||||| || |||||| | | || | |||| || || || Sbjct 3240789 GATG-AAATCCAAGAGAGCGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCAAT 3240847 Query 869395 GGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAG 869448 ||| || || | ||| ||| || ||| | | ||| || |||||||| Sbjct 3240848 GGCATTGAACAGATAATCCCTTTGCTGTGGATCCCTAATATATGTATCGATCAG 3240901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106478333107801