Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2 235 5e-57 seq6 111 1e-19 seq3 89.7 5e-13 >seq2 Length=4222574 Score = 235 bits (260), Expect = 5e-57 Identities = 733/1113 (66%), Gaps = 40/1113 (4%) Strand=Plus/Minus Query 138153 TTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCC 138212 ||||| |||||| || | ||| |||| ||| |||||||| || | ||||||||||| || Sbjct 4216030 TTTATTTACAGTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCC 4215971 Query 138213 CGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGG 138272 || || | || || ||| | || | || || || || | | | ||| | || Sbjct 4215970 GGTCTTAAGACCTGCTTTCCACGAATAAAAATGGATTGATGTTAATTTTCCATAATTAGG 4215911 Query 138273 TTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGC 138332 || || | || || || || ||||| ||||| || || || |||| ||| || Sbjct 4215910 TTCAGCTACGTGAATATTGAAAGACTGACTTTGATCAATAAAGGCTCCTCTGTCAGCCGC 4215851 Query 138333 CATGTTAATTAAATT--TTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATA 138390 ||| || || | || |||| || ||||||||||| || || || | ||||||||| Sbjct 4215850 CATTTTTAT--AGTTGATTTAATTGAAATCTCCCACACTGTTTTATACAAATCACGAATT 4215793 Query 138391 TGTCGCGGTATTGTTGCAATATTTTGAAT-GCTCC-CGTTGGCCGCAATGATGCGATTTC 138448 | ||| |||| | |||||||||| || | || || | | || || ||||| Sbjct 4215792 TCCTTCGGAATTGATTCAATATTTTGTATTGAACCACGATTT--GATATTATTTGATTTT 4215735 Query 138449 TCATGTCATCGTTGTACAGATTCAACTT-GATCAAGTCGTTTA-TCAGATATCTGTTTAT 138506 |||| || || | ||| || ||| || | | || || | | || || ||||| Sbjct 4215734 TCATCTCGTCATCCCACAAAT-CAAGTTCGGTTAAATCACGGAGTAAGTGATG-GTTTAC 4215677 Query 138507 GACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAA 138566 || |||||||| |||| ||||||||| | ||||||||| || ||||||| || Sbjct 4215676 TACTTGAAATTCGCCGGACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAA 4215617 Query 138567 CGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAG 138626 ||| || ||||| |||| || || || || | || || |||||| || || | | Sbjct 4215616 CGACTCATTGTTGCCCATTATTTGTGCAGTAGATGCTGTAGGCATGGGAGCAACGAGTAA 4215557 Query 138627 AGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATC 138686 |||||| | | ||| || || || || || || ||||||||| | ||| Sbjct 4215556 AGAATTTCTGACACCATGTTGCGCTATCGATTTTTTAAGAACATCCCAGTCCCAAAGATC 4215497 Query 138687 GCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTC 138746 | || ||| ||||||||||| ||||| || ||||| ||| | ||||| || | Sbjct 4215496 TGTTGGCGATTTATTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTTCCAAC 4215437 Query 138747 GTACGAATCGTATACACCAAACTCTT-GCGCCAACTCGTTGCTCGCCTCGAGCGCACCAT 138805 || | || ||| ||| ||||| | || || || ||| || || || || |||| Sbjct 4215436 ATAAGTCTCATATGGTCCAT-CTCTTTGAGCTAATTCACAGCTGGCTTCCAGAGCTCCAT 4215378 Query 138806 AGTAAATAGTTTCGGCAATCTGCTGATT---GAGCAATCGGGCCTCGGCGCTCTCGTACG 138862 |||| ||||||||| |||||||||||| || ||| || || || ||||| | Sbjct 4215377 AGTATATAGTTTCGAAAATCTGCTGATTTAAAAGAAAT---GCATCATGACTTTCGTAAG 4215321 Query 138863 GCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGAT 138922 || | | | |||||||| || | |||||| || || | ||| | ||| || | Sbjct 4215320 AATACCGCATTAATATTAACGCGTCCGCAAACCCTTGGACTCCAATTCCAATAGGACGGT 4215261 Query 138923 GGCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGT 138982 |||| | |||||| ||| || || | ||| || || |||| ||| || ||||||| Sbjct 4215260 GGCGTAAATTTGATTTTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTGT 4215201 Query 138983 TTAAATTTCGCACGACCACCTTAGTCGTA-TGCTTTAATC-GTTCAAAATCGTATGTGCC 139040 |||| ||| | || | ||||| || | |||||| | || ||| || || Sbjct 4215200 TTAAGTTTTTCGTAACAATTTTAGT--TACTTCTTTAAGCTTTTTAAAGTCATA------ 4215149 Query 139041 CCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACAC 139100 | || || | |||| ||||| | || | ||| || || | || ||||| Sbjct 4215148 CGATTTTTCAT-----GCGTC-ACAAACATATTAAGTGCAATTGACGCCAAATTACACAC 4215095 Query 139101 CGCCACTTCGTCGGGGTCGCTG--TATTCGACAATTTCGGCACACAAATTACTACACTTG 139158 || | ||| || || |||| || || || ||||| | |||| |||||| || || Sbjct 4215094 AGCTATTTCATCTGG--TGCTGAATACTCAACTATTTCTGTGCACAGATTACTGCATTTT 4215037 Query 139159 ATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATAC 139218 || || || | ||||||||| |||||||||| |||||| | ||| || | | ||| || Sbjct 4215036 ATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACACGAATCCTTAAATAACATGTAG 4214977 Query 139219 GGTGTGCCAGTTTCCACTTGTGTCTCTATAATG 139251 ||||| || || || ||||| | || |||||| Sbjct 4214976 GGTGTACCCGTCTCTACTTGAGATTCGATAATG 4214944 Score = 127 bits (140), Expect = 2e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | ||||| || ||||| || || ||||| | || || || || | Sbjct 180069 ATGCAAATCTTCGTKAAAACTCTCACCGGCAAGACCATTACCTTGGAGGTCGAGCCCTCT 180128 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||||||||| || || || ||||| Sbjct 180129 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGGATCCCACCAGATCAG 180188 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||||||||| || |||||||||||| | | | || || || ||| Sbjct 180189 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGACGCACTCTATCCGACTACAAC 180248 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 ||||| ||||| || || | ||||| ||| | || |||| || ||| | |||||| Sbjct 180249 ATTCAGAAGGAGTCCACTTTGCACTTAGTGCTCCGTCTGCGTGGTGGCATCATTGAGCC 180307 >seq6 Length=21059900 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| || || || || || ||||| || ||||||||||| || || || Sbjct 7471279 AAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAGCAGCGTTTGATCTTCGCTGGCAAG 7471220 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||||||| | | | |||| || || |||||||| ||||| || || ||||| Sbjct 7471219 CAGCTGGAGGATGGGCGCACTCTGTCCGACTACAACATTCAGAAGGAGTCTACTTTACAC 7471160 Query 24908 TTGGTGTTGCGATTGCGCGGAGGC 24931 |||||| | || | || |||||| Sbjct 7471159 TTGGTGCTCCGTCTACGTGGAGGC 7471136 >seq3 Length=21835025 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| ||||||| | || || || || || || || || || || | || Sbjct 1954858 ATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCCTGGAGGTTGAGCCTTCC 1954917 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| ||||| || ||||| || || || ||||| Sbjct 1954918 GATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAAGGCATTCCCCCAGATCAG 1954977 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || || ||||| ||| | | |||| || || || Sbjct 1954978 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTTTGTCTGACTACAAT 1955037 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || || |||| | || |||| || || Sbjct 1955038 ATCCAGAAGGAGTCGACCCTCCATCTGGTCCTCCGTCTGCGTGGTGG 1955084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449852312182840