Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq2 235 5e-57
seq6 111 1e-19
seq3 89.7 5e-13
>seq2
Length=4222574
Score = 235 bits (260), Expect = 5e-57
Identities = 733/1113 (66%), Gaps = 40/1113 (4%)
Strand=Plus/Minus
Query 138153 TTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCC 138212
||||| |||||| || | ||| |||| ||| |||||||| || | ||||||||||| ||
Sbjct 4216030 TTTATTTACAGTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCC 4215971
Query 138213 CGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGG 138272
|| || | || || ||| | || | || || || || | | | ||| | ||
Sbjct 4215970 GGTCTTAAGACCTGCTTTCCACGAATAAAAATGGATTGATGTTAATTTTCCATAATTAGG 4215911
Query 138273 TTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGC 138332
|| || | || || || || ||||| ||||| || || || |||| ||| ||
Sbjct 4215910 TTCAGCTACGTGAATATTGAAAGACTGACTTTGATCAATAAAGGCTCCTCTGTCAGCCGC 4215851
Query 138333 CATGTTAATTAAATT--TTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATA 138390
||| || || | || |||| || ||||||||||| || || || | |||||||||
Sbjct 4215850 CATTTTTAT--AGTTGATTTAATTGAAATCTCCCACACTGTTTTATACAAATCACGAATT 4215793
Query 138391 TGTCGCGGTATTGTTGCAATATTTTGAAT-GCTCC-CGTTGGCCGCAATGATGCGATTTC 138448
| ||| |||| | |||||||||| || | || || | | || || |||||
Sbjct 4215792 TCCTTCGGAATTGATTCAATATTTTGTATTGAACCACGATTT--GATATTATTTGATTTT 4215735
Query 138449 TCATGTCATCGTTGTACAGATTCAACTT-GATCAAGTCGTTTA-TCAGATATCTGTTTAT 138506
|||| || || | ||| || ||| || | | || || | | || || |||||
Sbjct 4215734 TCATCTCGTCATCCCACAAAT-CAAGTTCGGTTAAATCACGGAGTAAGTGATG-GTTTAC 4215677
Query 138507 GACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAA 138566
|| |||||||| |||| ||||||||| | ||||||||| || ||||||| ||
Sbjct 4215676 TACTTGAAATTCGCCGGACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAA 4215617
Query 138567 CGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAG 138626
||| || ||||| |||| || || || || | || || |||||| || || | |
Sbjct 4215616 CGACTCATTGTTGCCCATTATTTGTGCAGTAGATGCTGTAGGCATGGGAGCAACGAGTAA 4215557
Query 138627 AGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATC 138686
|||||| | | ||| || || || || || || ||||||||| | |||
Sbjct 4215556 AGAATTTCTGACACCATGTTGCGCTATCGATTTTTTAAGAACATCCCAGTCCCAAAGATC 4215497
Query 138687 GCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTC 138746
| || ||| ||||||||||| ||||| || ||||| ||| | ||||| || |
Sbjct 4215496 TGTTGGCGATTTATTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTTCCAAC 4215437
Query 138747 GTACGAATCGTATACACCAAACTCTT-GCGCCAACTCGTTGCTCGCCTCGAGCGCACCAT 138805
|| | || ||| ||| ||||| | || || || ||| || || || || ||||
Sbjct 4215436 ATAAGTCTCATATGGTCCAT-CTCTTTGAGCTAATTCACAGCTGGCTTCCAGAGCTCCAT 4215378
Query 138806 AGTAAATAGTTTCGGCAATCTGCTGATT---GAGCAATCGGGCCTCGGCGCTCTCGTACG 138862
|||| ||||||||| |||||||||||| || ||| || || || ||||| |
Sbjct 4215377 AGTATATAGTTTCGAAAATCTGCTGATTTAAAAGAAAT---GCATCATGACTTTCGTAAG 4215321
Query 138863 GCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGAT 138922
|| | | | |||||||| || | |||||| || || | ||| | ||| || |
Sbjct 4215320 AATACCGCATTAATATTAACGCGTCCGCAAACCCTTGGACTCCAATTCCAATAGGACGGT 4215261
Query 138923 GGCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGT 138982
|||| | |||||| ||| || || | ||| || || |||| ||| || |||||||
Sbjct 4215260 GGCGTAAATTTGATTTTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTGT 4215201
Query 138983 TTAAATTTCGCACGACCACCTTAGTCGTA-TGCTTTAATC-GTTCAAAATCGTATGTGCC 139040
|||| ||| | || | ||||| || | |||||| | || ||| || ||
Sbjct 4215200 TTAAGTTTTTCGTAACAATTTTAGT--TACTTCTTTAAGCTTTTTAAAGTCATA------ 4215149
Query 139041 CCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACAC 139100
| || || | |||| ||||| | || | ||| || || | || |||||
Sbjct 4215148 CGATTTTTCAT-----GCGTC-ACAAACATATTAAGTGCAATTGACGCCAAATTACACAC 4215095
Query 139101 CGCCACTTCGTCGGGGTCGCTG--TATTCGACAATTTCGGCACACAAATTACTACACTTG 139158
|| | ||| || || |||| || || || ||||| | |||| |||||| || ||
Sbjct 4215094 AGCTATTTCATCTGG--TGCTGAATACTCAACTATTTCTGTGCACAGATTACTGCATTTT 4215037
Query 139159 ATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATAC 139218
|| || || | ||||||||| |||||||||| |||||| | ||| || | | ||| ||
Sbjct 4215036 ATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACACGAATCCTTAAATAACATGTAG 4214977
Query 139219 GGTGTGCCAGTTTCCACTTGTGTCTCTATAATG 139251
||||| || || || ||||| | || ||||||
Sbjct 4214976 GGTGTACCCGTCTCTACTTGAGATTCGATAATG 4214944
Score = 127 bits (140), Expect = 2e-24
Identities = 171/239 (72%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | ||||| || ||||| || || ||||| | || || || || |
Sbjct 180069 ATGCAAATCTTCGTKAAAACTCTCACCGGCAAGACCATTACCTTGGAGGTCGAGCCCTCT 180128
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||||||||| || || || |||||
Sbjct 180129 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGGATCCCACCAGATCAG 180188
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| ||||||||||||| || |||||||||||| | | | || || || |||
Sbjct 180189 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGACGCACTCTATCCGACTACAAC 180248
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942
||||| ||||| || || | ||||| ||| | || |||| || ||| | ||||||
Sbjct 180249 ATTCAGAAGGAGTCCACTTTGCACTTAGTGCTCCGTCTGCGTGGTGGCATCATTGAGCC 180307
>seq6
Length=21059900
Score = 111 bits (122), Expect = 1e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
|||||||||||||| || || || || || ||||| || ||||||||||| || || ||
Sbjct 7471279 AAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAGCAGCGTTTGATCTTCGCTGGCAAG 7471220
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907
|||||||||||| | | | |||| || || |||||||| ||||| || || |||||
Sbjct 7471219 CAGCTGGAGGATGGGCGCACTCTGTCCGACTACAACATTCAGAAGGAGTCTACTTTACAC 7471160
Query 24908 TTGGTGTTGCGATTGCGCGGAGGC 24931
|||||| | || | || ||||||
Sbjct 7471159 TTGGTGCTCCGTCTACGTGGAGGC 7471136
>seq3
Length=21835025
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| ||||||| | || || || || || || || || || || | ||
Sbjct 1954858 ATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCCTGGAGGTTGAGCCTTCC 1954917
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || ||||| ||||| || ||||| || || || |||||
Sbjct 1954918 GATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAAGGCATTCCCCCAGATCAG 1954977
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| ||||||| ||||| || || ||||| ||| | | |||| || || ||
Sbjct 1954978 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTTTGTCTGACTACAAT 1955037
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||||| ||||| || || |||| | || |||| || ||
Sbjct 1955038 ATCCAGAAGGAGTCGACCCTCCATCTGGTCCTCCGTCTGCGTGGTGG 1955084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449852312182840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |