Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq6 150 1e-31 seq2 91.5 1e-13 >seq6 Length=21059900 Score = 150 bits (166), Expect = 1e-31 Identities = 160/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34437 ATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGG 34496 ||||| |||||||| ||||||||||| || || |||||||| ||||| || | || || Sbjct 7520058 ATCGAATTGCGTTTGGGCGCCCAGCTCACAGCCAAAGTACTTGGTCGGATAGGTAGCTGG 7520117 Query 34497 ACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCC 34556 | || | ||| | || | |||| ||||||||||| ||| || || ||||||||||| Sbjct 7520118 TCTCCCGATCGCTCTTGCCACCTCGGCCATGTTGACGAGGACCGTTTTAATGCCGTTGCC 7520177 Query 34557 CTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCAC 34616 ||| ||||| || ||||| || ||| |||||||||||||| ||||| |||| || Sbjct 7520178 CTTACCTTCCACTTTGGCCTGGAGGCGTGGCATTTTGTAGCGATAGAAGATATCCGTAAC 7520237 Query 34617 ATTGCGGTTAACGTTCACAGTCCCCATCGTG 34647 | |||| || || || || ||| ||||| || Sbjct 7520238 ACTGCGATTCACATTGACGGTCGCCATCTTG 7520268 >seq2 Length=4222574 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| || || |||||| | |||||||| ||||||||| | || ||||| Sbjct 180066 AAAATGCAAATCTTCGTKAAAACTCTCACCGGCAAGACCATTACCTTGGAGGTCGAGCCC 180125 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || || ||| | || || ||||| ||||||||||| | || ||| Sbjct 180126 TCTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGGATCCCACCAGAT 180185 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | ||| || || ||||||||||||| | || | | || ||| Sbjct 180186 CAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGACGCACTCTATCCGACTAC 180245 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| || || || || |||||| | ||| | | ||||| || || Sbjct 180246 AACATTCAGAAGGAGTCCACTTTGCACTTAGTGCTCCGTCTGCGTGGTGG 180295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412801081274129