Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4 109 9e-18 seq3 98.7 2e-14 seq6 96.9 5e-14 >seq4 Length=22154029 Score = 109 bits (120), Expect = 9e-18 Identities = 144/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 ||||| | || |||| || ||| ||||||| ||||||| || |||| |||||| Sbjct 3240954 AAACAACGAGCTTCGGTTATTTGCACCTCCTGGCTGAAGCGCTCGACCAGATTCTCATTA 3241013 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 || ||||| ||| |||||| || |||||||| || ||| ||||||||||||||||| Sbjct 3241014 ACAATGCCATCGGAGGCGGCAAAGAAGGCGAGCACATGCGAGATAAAGTGACGCTCGTTA 3241073 Query 796261 TC-GCTGAGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCA 796319 || | | | || | |||||| || || | ||| || |||||||| | ||||| Sbjct 3241074 TCAGTTAAACGTG-CCCAGTCCGCCAAATCCTTGGAGAGATCCACCTCCTCCACAGTCCA 3241132 Query 796320 AAAGGAGGCCTCGGCCT 796336 || ||||||||||||| Sbjct 3241133 GAATGAGGCCTCGGCCT 3241149 >seq3 Length=21835025 Score = 98.7 bits (108), Expect = 2e-14 Identities = 179/262 (68%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 2411714 GCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGA 2411773 ||||||| |||||||| ||||| | || ||||| || ||| ||||| | | Sbjct 21695686 GCTGGTAGTCGCTGCCCTTTACAAACTTCAGCTTATCCAATGGAACGTCAATGGAACGCA 21695745 Query 2411774 GCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCG 2411833 ||| |||||||| | |||||| | || |||||| || |||||||| Sbjct 21695746 ACATCGCCTTGATCACCTGCTCGTAGTATTTCGTGCGCAGCTCGAGCAGCGGCCACGGCG 21695805 Query 2411834 TCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACCCGACATCCGG 2411893 ||| ||||| | | |||||||| |||||||| || || ||||| ||| |||| Sbjct 21695806 CCTTCATGTTGTCCAAATAGGCGTGCAGATCGGCAAACAGTATTGTCACCTCACAGCCGG 21695865 Query 2411894 CCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAGTAGCCCAGATGGGGCTTGCCCG 2411953 | | | ||||| || | || | ||||||||||| ||| | | ||| ||||| |||| Sbjct 21695866 CTTTCAAGAAGTCCGCAATCTTGGACATGGGCACAAAATAGGCGACATGTGGCTTTCCCG 21695925 Query 2411954 TCGGCGCGGTGCCCCAATAAAT 2411975 ||| ||| |||||||| || || Sbjct 21695926 TCGTCGCCGTGCCCCAGTAGAT 21695947 >seq6 Length=21059900 Score = 96.9 bits (106), Expect = 5e-14 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625 || ||||| ||||| ||||| | | ||||| | ||| | || ||||| | Sbjct 12228814 GAGAAGCGTACCGATGACATCACATCCTGGGATGCAGATTTTCTTAAAGTAGACCAGGGC 12228755 Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 || || || || ||||| | ||||||||||| | || |||||| | | || || || Sbjct 12228754 ACTCTATTCGAACTGATCTTAGCCGCCAACTATTTGGATATCAAGGGCTTGCTGGAATTA 12228695 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 |||||||| ||||||||| | || ||||| ||| | ||||||||||| ||||| || Sbjct 12228694 ACCTGCAAGACGGTGGCCAACATGATTAAGGGGAAGACACCCGAGGACATTCGCAAAACG 12228635 Query 2035746 TTTAACATCAA 2035756 |||||||| || Sbjct 12228634 TTTAACATTAA 12228624 Score = 95.1 bits (104), Expect = 2e-13 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 428995 ACAACGATATCCGCGGCCAAAAGCAGTCGACCCAGCGGTCGGGCAAGCCCACCAAGGGCG 429054 |||||||||| | |||| || ||| ||| |||||||||||| || | Sbjct 2976777 ACAACGATATGCCCGGCATGCCGCGTGCGATGCAGAAGTCGGGCAAGCCGCTGAAAGCGA 2976836 Query 429055 TCGTGGAGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCG 429114 || || || |||||||||||||||| || ||||| || |||| ||||| ||||| | Sbjct 2976837 TCAAGGCACGTCTCAAGGGCAAGGAGGGGCGTATCCGTGGTAATTTGATGGGAAAGCGTG 2976896 Query 429115 TCAACTTTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGG 429174 || |||| | || || | ||||||| ||||| ||| | | ||| ||| |||| | Sbjct 2976897 TCGACTTCTCTGCACGGACTGTCATCACGCCCGATCCCAATTTGCGCATCGACCAGGTCG 2976956 Query 429175 GCGTGCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGACGCCCTT 429229 ||||||| | ||| | ||| || ||||| || |||| |||||||| || Sbjct 2976957 GCGTGCCACGTTCGATAGCACAGAACCTAACCTTCCCGGAGCTGGTGACGCCATT 2977011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915389765660267