Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq4 109 9e-18
seq3 98.7 2e-14
seq6 96.9 5e-14
>seq4
Length=22154029
Score = 109 bits (120), Expect = 9e-18
Identities = 144/197 (73%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200
||||| | || |||| || ||| ||||||| ||||||| || |||| ||||||
Sbjct 3240954 AAACAACGAGCTTCGGTTATTTGCACCTCCTGGCTGAAGCGCTCGACCAGATTCTCATTA 3241013
Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260
|| ||||| ||| |||||| || |||||||| || ||| |||||||||||||||||
Sbjct 3241014 ACAATGCCATCGGAGGCGGCAAAGAAGGCGAGCACATGCGAGATAAAGTGACGCTCGTTA 3241073
Query 796261 TC-GCTGAGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCA 796319
|| | | | || | |||||| || || | ||| || |||||||| | |||||
Sbjct 3241074 TCAGTTAAACGTG-CCCAGTCCGCCAAATCCTTGGAGAGATCCACCTCCTCCACAGTCCA 3241132
Query 796320 AAAGGAGGCCTCGGCCT 796336
|| |||||||||||||
Sbjct 3241133 GAATGAGGCCTCGGCCT 3241149
>seq3
Length=21835025
Score = 98.7 bits (108), Expect = 2e-14
Identities = 179/262 (68%), Gaps = 0/262 (0%)
Strand=Plus/Plus
Query 2411714 GCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGA 2411773
||||||| |||||||| ||||| | || ||||| || ||| ||||| | |
Sbjct 21695686 GCTGGTAGTCGCTGCCCTTTACAAACTTCAGCTTATCCAATGGAACGTCAATGGAACGCA 21695745
Query 2411774 GCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCG 2411833
||| |||||||| | |||||| | || |||||| || ||||||||
Sbjct 21695746 ACATCGCCTTGATCACCTGCTCGTAGTATTTCGTGCGCAGCTCGAGCAGCGGCCACGGCG 21695805
Query 2411834 TCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACCCGACATCCGG 2411893
||| ||||| | | |||||||| |||||||| || || ||||| ||| ||||
Sbjct 21695806 CCTTCATGTTGTCCAAATAGGCGTGCAGATCGGCAAACAGTATTGTCACCTCACAGCCGG 21695865
Query 2411894 CCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAGTAGCCCAGATGGGGCTTGCCCG 2411953
| | | ||||| || | || | ||||||||||| ||| | | ||| ||||| ||||
Sbjct 21695866 CTTTCAAGAAGTCCGCAATCTTGGACATGGGCACAAAATAGGCGACATGTGGCTTTCCCG 21695925
Query 2411954 TCGGCGCGGTGCCCCAATAAAT 2411975
||| ||| |||||||| || ||
Sbjct 21695926 TCGTCGCCGTGCCCCAGTAGAT 21695947
>seq6
Length=21059900
Score = 96.9 bits (106), Expect = 5e-14
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625
|| ||||| ||||| ||||| | | ||||| | ||| | || ||||| |
Sbjct 12228814 GAGAAGCGTACCGATGACATCACATCCTGGGATGCAGATTTTCTTAAAGTAGACCAGGGC 12228755
Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685
|| || || || ||||| | ||||||||||| | || |||||| | | || || ||
Sbjct 12228754 ACTCTATTCGAACTGATCTTAGCCGCCAACTATTTGGATATCAAGGGCTTGCTGGAATTA 12228695
Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745
|||||||| ||||||||| | || ||||| ||| | ||||||||||| ||||| ||
Sbjct 12228694 ACCTGCAAGACGGTGGCCAACATGATTAAGGGGAAGACACCCGAGGACATTCGCAAAACG 12228635
Query 2035746 TTTAACATCAA 2035756
|||||||| ||
Sbjct 12228634 TTTAACATTAA 12228624
Score = 95.1 bits (104), Expect = 2e-13
Identities = 162/235 (69%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 428995 ACAACGATATCCGCGGCCAAAAGCAGTCGACCCAGCGGTCGGGCAAGCCCACCAAGGGCG 429054
|||||||||| | |||| || ||| ||| |||||||||||| || |
Sbjct 2976777 ACAACGATATGCCCGGCATGCCGCGTGCGATGCAGAAGTCGGGCAAGCCGCTGAAAGCGA 2976836
Query 429055 TCGTGGAGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCG 429114
|| || || |||||||||||||||| || ||||| || |||| ||||| ||||| |
Sbjct 2976837 TCAAGGCACGTCTCAAGGGCAAGGAGGGGCGTATCCGTGGTAATTTGATGGGAAAGCGTG 2976896
Query 429115 TCAACTTTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGG 429174
|| |||| | || || | ||||||| ||||| ||| | | ||| ||| |||| |
Sbjct 2976897 TCGACTTCTCTGCACGGACTGTCATCACGCCCGATCCCAATTTGCGCATCGACCAGGTCG 2976956
Query 429175 GCGTGCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGACGCCCTT 429229
||||||| | ||| | ||| || ||||| || |||| |||||||| ||
Sbjct 2976957 GCGTGCCACGTTCGATAGCACAGAACCTAACCTTCCCGGAGCTGGTGACGCCATT 2977011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915389765660267
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |