Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2 123 2e-23 seq3 113 3e-20 seq6 93.3 3e-14 >seq2 Length=4222574 Score = 123 bits (136), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| ||||| |||| |||| ||||| ||||| ||||| || Sbjct 180260 CTCCTTCTGAATGTTGTAGTCGGATAGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCAAA 180201 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||| || ||||| ||| | || | ||| || ||||| | || || ||||| | Sbjct 180200 GATCAGACGCTGCTGATCTGGTGGGATCCCTTCTTTGTCCTGGATCTTGGCCTTGAC--A 180143 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | ||| || |||||| || | ||| |||||||| || ||||| || || Sbjct 180142 TTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTAATGGTCTTGCCGGTGAGAGTTTTM 180083 Query 34964 ACAAAGATCTGCAT 34977 || ||||| ||||| Sbjct 180082 ACGAAGATTTGCAT 180069 >seq3 Length=21835025 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 |||||||| || | ||| ||||||||| || || ||||| || | |||| |||| Sbjct 1955069 AGGACCAGATGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAAGTGCGACCATCT 1955010 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||||||||| |||||||||||||| || ||||| ||| | || | || ||||| || Sbjct 1955009 TCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTATCT 1954950 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || || | ||| |||||| Sbjct 1954949 TGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAGGGTGATGGTC 1954890 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| | || || || ||||||||||| Sbjct 1954889 TTTCCCGTCAAAGTTTTAACGAAGATCTGCAT 1954858 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||||||||| || || || || | | |||| |||| ||||||||||| |||||||| Sbjct 1955451 CTCCTTCTGAATATTGTAATCGGACAAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAA 1955392 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||| || ||||| ||| | || | || |||||||| | || || || ||| Sbjct 1955391 GATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTCACGTT 1955332 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || | ||| || || | || |||||||| || || |||||||| || Sbjct 1955331 CTCAATGGTATCGGATGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCAC 1955272 Query 34966 AAAGATCTGCAT 34977 ||||| ||||| Sbjct 1955271 GAAGATTTGCAT 1955260 >seq6 Length=21059900 Score = 93.3 bits (102), Expect = 3e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| || || ||||| |||| ||||| ||||| || ||||| Sbjct 7471172 CTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAA 7471231 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| || ||||| ||| | || | ||||||||||| Sbjct 7471232 GATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTC 7471270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325660834574807