Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1 208 6e-48 seq2244 87.8 1e-11 >seq1 Length=24697304 Score = 208 bits (230), Expect = 6e-48 Identities = 933/1462 (64%), Gaps = 16/1462 (1%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 || || ||||| |||||||| |||||||| | || || || || ||||| || || || Sbjct 8900186 GCGGTGACATTCAGAATACCGTTGGCATCAATGTCGAAGGTCACCTCAATCTGGGGAACG 8900245 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | | || ||||| || || || | ||| | ||||| |||||| || || Sbjct 8900246 CCGCGTGGTGCGGGTGGAATGCCCGACAGCTCGAATTTGCCCAGCAGATTATTGTCCTTG 8900305 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | || ||||| ||| | | ||||| || | | || || ||||| || Sbjct 8900306 GTCATGGCACGCTCACCTTCGTAGACCTGGATCAACACACCGGGCTGGTTGTCTGAGTAG 8900365 Query 281606 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 || || || ||||| | | || || || || ||||| | | || | | | Sbjct 8900366 GTGGTGAAGG-TCTGGGTCTGCTTTGTGGGGATGGTGGTGTTGCGCTTGATCAACACGCT 8900424 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||| | || ||||| || || | ||| || || || || |||||||| | || | | Sbjct 8900425 CATCACGCCGCCAGCGGTCTCGATACCCAGCGACAGGGGGGTGACATCGAGCAGCAACAG 8900484 Query 281725 ATTTTGAAGTTTTT-CATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCAT 281783 || || | || | | | | | | ||||| |||| || || | |||||||||| Sbjct 8900485 ATCCTGCACTTCCTGCGACTTGTCGCCGTGCAAGA-TAGCAGCCTGGACGGCAGCACCAT 8900543 Query 281784 ATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-T 281842 | |||||||| ||||| ||||| | | | || || | || || ||||| | || | Sbjct 8900544 AAGCAACAGCCTCATCGGGATTGATGGACTTGTTCAGCTCCTTGCCGTTGAACAGATCCT 8900603 Query 281843 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 281902 | || | | | ||||| || ||||| | || || || || || ||||| || || Sbjct 8900604 GCAATAGGCGCTGC-ACCTTGGGGATACGGGTGGAGCCACCGACCAACACAATATCGTGA 8900662 Query 281903 ACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGACCAGC 281961 | || || |||| || | ||| || | || || || |||| || | || Sbjct 8900663 ATGGCCGACTTGTCCAACTTAGCATCACGCAATGCCTTCTCCACAGGGTCCATGGT--GC 8900720 Query 281962 T-CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAAT 282020 | | |||| || | || || ||||| ||| | || | | | | ||| Sbjct 8900721 TGCGGAACAGATCAGCGTTCAGCTCCTCGAAACGAGCACGCGTGATCGAGGTGTAGAAAT 8900780 Query 282021 CAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCAC 282080 | | || ||||||| ||||| | ||||| | | || || || || || || | || Sbjct 8900781 CGGTACCCTCGAACAGCGAATCGATCTCAATGCTCGCCTGGGTAGATGAGGAAAGAGTAC 8900840 Query 282081 GTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCAA 282138 | || ||||| ||||| || || | || | || | || ||| ||| | ||| Sbjct 8900841 GCTTTGCACGCTCACAGGCAGTGCGCAGACGACGCAGAGCAC--GCTTGTTGGTGGTCAG 8900898 Query 282139 ATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAA 282198 |||| | || | || | |||||| || | ||| | || || |||||||| || || Sbjct 8900899 ATCTTTCTTGTGCTTGCGCTTGAACTCCTGCACAAAGTGAGTGACTAGACGATTGTCGAA 8900958 Query 282199 ATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTC 282258 ||| ||||| ||||| | || | || | |||| | | || | ||| | || || || Sbjct 8900959 ATCCTCACCACCCAAATGGGTGTCACCAGCAGTAGATTTGACCTCGAAGATGCCGTCATC 8901018 Query 282259 AAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCAT 282318 || || | || | |||||| || ||||| |||| ||| ||||| | ||||| Sbjct 8901019 AATCGAAAGAATGGAGACATCAAAAGTACCACCGCCCAAATCGAAAATCAACACATTACG 8901078 Query 282319 TTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAAT 282378 || | || || || || ||||| || | || || |||||||| ||||| || Sbjct 8901079 CTCGCCAACAGCCTTCTTGTCCAGGCCATAGGCGATGGCCGCGGCAGTTGGCTCATTGAT 8901138 Query 282379 AATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGA 282438 ||| | ||| || || | ||| || || | || ||||| || || || || | ||||| Sbjct 8901139 AATACGCAATACGTTCAAACCGGCGATGGTGCCAGCATCCTTGGTTGCCTGACGCTGTGA 8901198 Query 282439 ATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGC 282498 |||||| ||||| || || ||||| || ||||||| || || || || | || || Sbjct 8901199 ATCGTTGAAATAGGCGGGCACAGTGATGACGGCATTGGTAACCGTCTTGCCCAGGTACGC 8901258 Query 282499 GCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTG 282558 || || | ||||| || | || | ||| || || || | || || ||| | | Sbjct 8901259 CTCGGCGGTCTCCTTCATCTTGGTCAACACCATGGAGGAGATCTCCTC-GGGGAAGAAAG 8901317 Query 282559 -CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTT 282617 ||| |||| | || | || || | | || || | |||| || | || | Sbjct 8901318 TCTTCTTCTCATCCTTGTACGTAACCTCGATCTTGGGCTTGCCATCAACGTTCACGACCT 8901377 Query 282618 TAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTA 282677 || ||||| | |||||||| || || || |||| || | | |||||| | Sbjct 8901378 CGAAAGGCCAGTGCTTCATATCAGACTGCACGGCCGCATCATCGAATTTGCGACCAATCA 8901437 Query 282678 ATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCAT 282737 || || ||||| || || || | |||||| || | || | || | ||||| || | Sbjct 8901438 GACGCTTAGCATCGAAGATTGTTTGGGTTGGGTTCATGGCCACCTGGTTCTTGGCGGCGT 8901497 Query 282738 CTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTT 282797 | ||||||| | | || ||||| || || | |||||| ||||| || || |||||||| | Sbjct 8901498 CACCAATCAAACGCTCCGTCTCCGTGAAGGCAACATAAGATGGGGTGGTACGATTACCCT 8901557 Query 282798 GATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTG 282857 |||| || ||||| || ||||| || |||| || | ||||| || ||| | |||| Sbjct 8901558 GATCGTTGGCAATGATCTCAACCTTGCCATGCTGGAACACACCCACGCAAGAGTAGGTTG 8901617 Query 282858 TTCCTAAATCAATACCAATAGC 282879 | || ||||||||||||| ||| Sbjct 8901618 TGCCCAAATCAATACCAACAGC 8901639 Score = 105 bits (116), Expect = 5e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 282722 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 282781 |||| ||| |||||||| ||||| || | ||||| || |||| | ||||| || || Sbjct 3429298 TGATTTTTAGCTGCATCGCCAATTAGGCGCTCTGTGTCGTTAAAGGCCACATACGAGGGC 3429357 Query 282782 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCT 282841 || || ||||| ||||||||||| |||||||| ||||||||| || ||||| ||||| Sbjct 3429358 GTCGTCCGATTGCCTTGATCATTGGCAATAATCTCAACTTTATTGTTCTGCCAAACACCC 3429417 Query 282842 ACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 || || | || || || | ||| |||||||| || Sbjct 3429418 ACGCATGAGTAGGTGGTGCCCAGATCGATACCAATTGC 3429455 >seq2244 Length=2929 Score = 87.8 bits (96), Expect = 1e-11 Identities = 124/173 (72%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 637122 TATT-GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGAT 637180 |||| || || | |||||||||||| || || ||| |||||||| | || || ||| | | Sbjct 2361 TATTAGTTGACTTTTCTTCTCCAAACATCGCAAAACAAATGCATGTCGGTCACTTACGTT 2420 Query 637181 CAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATC 637240 | || || ||||| || || || || ||| | | ||| | ||| ||||| || Sbjct 2421 CCACCATAATTGGGGAGTCAATCTGCAGGCTTCTTGAATTTCTACAACATGATGTAATTC 2480 Query 637241 GTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTAT 637293 | || |||||| | || ||||||||||| || || |||||| | || ||| || Sbjct 2481 GCATCAATCATCTCGGGGATTGGGGAACGCAGTTTGGTATGCTTATAGCTCAT 2533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740235031731978