Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq2 143 3e-29 >seq2 Length=4222574 Score = 143 bits (158), Expect = 3e-29 Identities = 496/768 (65%), Gaps = 17/768 (2%) Strand=Plus/Minus Query 150699 TTAGATCATCGACCAAGTAGCGGTTGACAACTTGAAATTCGCCCGACAAAACACGTCTCA 150758 ||| |||| || |||| |||| || |||||||||||||| ||||| || ||||| Sbjct 4215704 TTAAATCACGGAGTAAGTGATGGTTTACTACTTGAAATTCGCCGGACAATACTCGTCTTG 4215645 Query 150759 AAAACAAATTACTGTGAA----ACGGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCG 150814 | | || |||| | || || || ||||| |||||| | ||||||||| Sbjct 4215644 TGTAAATGTT----TGAAGTATAAGGCTCGAACGACTCATTGTTGCCCATTATTTGTGCA 4215589 Query 150815 GTCGTGGCCGTCGGCATGTACGCCACAAGCAATGAATTACGTAATCCGTATTTTTGTAT- 150873 || | || || |||||| || || || || ||||| | | || | || ||| Sbjct 4215588 GTAGATGCTGTAGGCATGGGAGCAACGAGTAAAGAATTTCTGACACCATGTTGCGCTATC 4215529 Query 150874 -ATTTATTTTCAACTGTGACCAGTCCCATAACGAAGTCGGTACCGTATTCCACAAATCGT 150932 |||| || ||| ||||||||| | || || ||||||||| ||| | Sbjct 4215528 GATTTTTTAAGAACATC--CCAGTCCCAAAGATCTGTTGGCGATTTATTCCACATATCAT 4215471 Query 150933 ATTGCAATATTCCTTCGCTCGCTTTGCTACCGGCAAACGTGCTATAAGGCTCA-CTAACA 150991 | ||||| ||||||| ||| || || || || | || ||| || || || Sbjct 4215470 ACTGCAAAATTCCTTTGCTTACTGGACTTCCAACATAAGTCTCATATGGTCCATCTCTTT 4215411 Query 150992 GATGCCAGTTCGTAACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTA 151051 || || | ||| | ||||| || || || ||| || | |||||| ||| || | | Sbjct 4215410 GA-GCTAATTCACAGCTGGCTTCCAGAGCTCCATAGTATATAGTTTCGAAAATCTGCTGA 4215352 Query 151052 TTCAATAGAACGGCAGCATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCC 151111 || || |||| ||| ||| || |||| | |||| | | || || || || Sbjct 4215351 TTTAAAAGAAATGCATCATGACTTTCGTAAGAATACCGCATTAATATTAACGCGTCCGCA 4215292 Query 151112 AAACCTTGAATGCCTATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCA 151171 || ||||| | || || || || ||||| ||||| | ||| |||||||| || | Sbjct 4215291 AACCCTTGGACTCCAATTCCAATAGGACGGTGGCGTAAATTTGATTTTTTAGCTTCTGGC 4215232 Query 151172 ATAGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATTCACTACATGTTTGACCACA 151231 | ||||||| |||| |||||| ||||| || || | ||| ||| ||| || Sbjct 4215231 AAAGGGTAGTAATTTATATCAATTATTTTGTTTAAGTTTTTCGTAACAATTTTAGTTACT 4215172 Query 151232 GTGTGCAATAGTTGAAAATCAAAAG---TATCATTATTGATATATTTATTGACGGCAATC 151288 | | || ||| ||| | | | |||| | | | | |||| | ||||| Sbjct 4215171 TCTTTAAGCTTTTTAAAGTCATACGATTTTTCATGCGTCACAAACATATTAAGTGCAATT 4215112 Query 151289 GACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACAC 151348 ||||| | |||||| || || |||| || || || |||| | |||||||| | ||| Sbjct 4215111 GACGCCAAATTACACACAGCTATTTCATCTGGTGCTGAATACTCAACTATTTCTGTGCAC 4215052 Query 151349 AAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCC 151408 | ||| ||||||||||| ||| ||| ||| |||||||| | ||| || | ||| Sbjct 4215051 AGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACACGAATCC 4214992 Query 151409 TTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATAATG 151456 || |||||||||| ||||| || || || ||||| ||| |||||| Sbjct 4214991 TTAAATAACATGTAGGGTGTACCCGTCTCTACTTGAGATTCGATAATG 4214944 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | ||||| || | || || || || || |||||||| ||| Sbjct 180296 GCCACCACGCAGACGGAGCACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGA 180237 Query 137244 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | |||| || | || || || || || || ||| |||||||||| |||||||| || | Sbjct 180236 TAGAGTGCGTCCA-TCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTG 180178 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || ||||||||||| || || || | | || | ||||| | ||| || | Sbjct 180177 GGATCCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGA 180118 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | || | || | ||||||||||| | ||||| ||||| |||||||| Sbjct 180117 CCTCCAAGGTAATGGTCTTGCCGGTGAGAGTTTTMACGAAGATTTGCAT 180069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488494821939600