Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq6943 95.1 2e-14
seq3754 95.1 2e-14
seq716 95.1 2e-14
seq4 95.1 2e-14
seq3 95.1 2e-14
>seq6943
Length=1146
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 747 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 688
Query 8718 CCCGACGAGGAG 8729
|||| || ||||
Sbjct 687 CCCGTCGGGGAG 676
Score = 91.5 bits (100), Expect = 2e-13
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand=Plus/Minus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||
Sbjct 748 GTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATT 689
Query 11788 CCCCGACGAGGAGGGAGGTT 11807
||||| || |||| || |||
Sbjct 688 CCCCGTCGGGGAGAGATGTT 669
Score = 91.5 bits (100), Expect = 2e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| || |||||| | |||||||||||||||| | |||| |||||||| |||||||||
Sbjct 676 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 735
Query 139413 TACTAACGAGGATTTTGGTA 139432
||||| |||||| ||||||
Sbjct 736 TACTATCGAGGACGTTGGTA 755
>seq3754
Length=1718
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 1016 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 957
Query 8718 CCCGACGAGGAG 8729
|||| || ||||
Sbjct 956 CCCGTCGGGGAG 945
Score = 89.7 bits (98), Expect = 7e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 680 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 739
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 740 CCAGTCGGGGAG 751
Score = 89.7 bits (98), Expect = 7e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| || |||||| | |||||||||||||||| | |||| |||||||| |||||||||
Sbjct 945 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1004
Query 139413 TACTAACGAGGATTTTG 139429
||||| ||||||| |||
Sbjct 1005 TACTATCGAGGATGTTG 1021
Score = 87.8 bits (96), Expect = 2e-12
Identities = 64/73 (88%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 1016 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 957
Query 11789 CCCGACGAGGAGG 11801
|||| || |||||
Sbjct 956 CCCGTCGGGGAGG 944
Score = 84.2 bits (92), Expect = 3e-11
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||
Sbjct 679 GTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATT 738
Query 11788 CCCCGACGAGGAG 11800
||| | || ||||
Sbjct 739 CCCAGTCGGGGAG 751
>seq716
Length=1004
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 255 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 314
Query 8718 CCCGACGAGGAG 8729
|||| || ||||
Sbjct 315 CCCGTCGGGGAG 326
Score = 87.8 bits (96), Expect = 2e-12
Identities = 64/73 (88%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||
Sbjct 254 GTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATT 313
Query 11788 CCCCGACGAGGAG 11800
||||| || ||||
Sbjct 314 CCCCGTCGGGGAG 326
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| || |||||| | |||||||||||||||| | |||| |||||||| |||||||||
Sbjct 326 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 267
Query 139413 TACTAACGAGGA 139424
||||| ||||||
Sbjct 266 TACTATCGAGGA 255
>seq4
Length=22154029
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 17509658 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 17509717
Query 8718 CCCGACGAGGAG 8729
|||| || ||||
Sbjct 17509718 CCCGTCGGGGAG 17509729
Score = 93.3 bits (102), Expect = 6e-14
Identities = 76/92 (83%), Gaps = 3/92 (3%)
Strand=Plus/Minus
Query 139347 CCACAA---CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATAT 139403
|||||| |||| || |||||| | |||||||||||||||| | |||| ||||||||
Sbjct 17509738 CCACAATCTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 17509679
Query 139404 TAACCACTATACTAACGAGGATTTTGGTACAC 139435
|||||||||||||| |||||||| | | ||||
Sbjct 17509678 TAACCACTATACTATCGAGGATTGTTGAACAC 17509647
Score = 89.7 bits (98), Expect = 7e-13
Identities = 74/89 (83%), Gaps = 1/89 (1%)
Strand=Plus/Plus
Query 11716 GTTGTGTAACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGA 11774
||||||| || |||||| |||||||||||| ||||| |||| ||||| | |||||||
Sbjct 17509644 GTTGTGTTCAACAATCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGA 17509703
Query 11775 CCGGGGTTCGATTCCCCGACGAGGAGGGA 11803
||||||||| |||||||| || |||| ||
Sbjct 17509704 CCGGGGTTCAATTCCCCGTCGGGGAGAGA 17509732
Score = 89.7 bits (98), Expect = 7e-13
Identities = 60/67 (90%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 17510021 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 17510080
Query 8718 CCCGACG 8724
| |||||
Sbjct 17510081 CACGACG 17510087
Score = 87.8 bits (96), Expect = 2e-12
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 139358 CGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTATACTA 139417
||||| ||| | |||||||||||||||| | |||| |||||||| ||||||||||||||
Sbjct 17510087 CGTCGTGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTATACTA 17510028
Query 139418 ACGAGGATTTTGGTACAC 139435
|||||||| | | ||||
Sbjct 17510027 TCGAGGATTGTTGAACAC 17510010
Score = 84.2 bits (92), Expect = 3e-11
Identities = 68/81 (84%), Gaps = 1/81 (1%)
Strand=Plus/Plus
Query 11716 GTTGTGTAACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGA 11774
||||||| || |||||| |||||||||||| ||||| |||| ||||| | |||||||
Sbjct 17510007 GTTGTGTTCAACAATCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGA 17510066
Query 11775 CCGGGGTTCGATTCCCCGACG 11795
||||||||| ||||| |||||
Sbjct 17510067 CCGGGGTTCAATTCCACGACG 17510087
>seq3
Length=21835025
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 12445427 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 12445368
Query 8718 CCCGACGAGGAG 8729
|||| || ||||
Sbjct 12445367 CCCGTCGGGGAG 12445356
Score = 89.7 bits (98), Expect = 7e-13
Identities = 66/76 (87%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||
Sbjct 12445428 GTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATT 12445369
Query 11788 CCCCGACGAGGAGGGA 11803
||||| || |||| ||
Sbjct 12445368 CCCCGTCGGGGAGAGA 12445353
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| || |||||| | |||||||||||||||| | |||| |||||||| |||||||||
Sbjct 12445356 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 12445415
Query 139413 TACTAACGAGGATTTTGGTACACGCT 139438
||||| |||||| || || |||||
Sbjct 12445416 TACTATCGAGGACGTTAATAAACGCT 12445441
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652779083010320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |