Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq6943 95.1 2e-14 seq3754 95.1 2e-14 seq716 95.1 2e-14 seq4 95.1 2e-14 seq3 95.1 2e-14 >seq6943 Length=1146 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 747 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 688 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 687 CCCGTCGGGGAG 676 Score = 91.5 bits (100), Expect = 2e-13 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| ||| Sbjct 748 GTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATT 689 Query 11788 CCCCGACGAGGAGGGAGGTT 11807 ||||| || |||| || ||| Sbjct 688 CCCCGTCGGGGAGAGATGTT 669 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| | |||||||||||||||| | |||| |||||||| ||||||||| Sbjct 676 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 735 Query 139413 TACTAACGAGGATTTTGGTA 139432 ||||| |||||| |||||| Sbjct 736 TACTATCGAGGACGTTGGTA 755 >seq3754 Length=1718 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 1016 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 957 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 956 CCCGTCGGGGAG 945 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 680 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 739 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 740 CCAGTCGGGGAG 751 Score = 89.7 bits (98), Expect = 7e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| | |||||||||||||||| | |||| |||||||| ||||||||| Sbjct 945 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1004 Query 139413 TACTAACGAGGATTTTG 139429 ||||| ||||||| ||| Sbjct 1005 TACTATCGAGGATGTTG 1021 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 1016 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 957 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 956 CCCGTCGGGGAGG 944 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| ||| Sbjct 679 GTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATT 738 Query 11788 CCCCGACGAGGAG 11800 ||| | || |||| Sbjct 739 CCCAGTCGGGGAG 751 >seq716 Length=1004 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 255 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 314 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 315 CCCGTCGGGGAG 326 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| ||| Sbjct 254 GTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATT 313 Query 11788 CCCCGACGAGGAG 11800 ||||| || |||| Sbjct 314 CCCCGTCGGGGAG 326 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| | |||||||||||||||| | |||| |||||||| ||||||||| Sbjct 326 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 267 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 266 TACTATCGAGGA 255 >seq4 Length=22154029 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 17509658 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 17509717 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 17509718 CCCGTCGGGGAG 17509729 Score = 93.3 bits (102), Expect = 6e-14 Identities = 76/92 (83%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 139347 CCACAA---CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATAT 139403 |||||| |||| || |||||| | |||||||||||||||| | |||| |||||||| Sbjct 17509738 CCACAATCTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 17509679 Query 139404 TAACCACTATACTAACGAGGATTTTGGTACAC 139435 |||||||||||||| |||||||| | | |||| Sbjct 17509678 TAACCACTATACTATCGAGGATTGTTGAACAC 17509647 Score = 89.7 bits (98), Expect = 7e-13 Identities = 74/89 (83%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11716 GTTGTGTAACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGA 11774 ||||||| || |||||| |||||||||||| ||||| |||| ||||| | ||||||| Sbjct 17509644 GTTGTGTTCAACAATCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGA 17509703 Query 11775 CCGGGGTTCGATTCCCCGACGAGGAGGGA 11803 ||||||||| |||||||| || |||| || Sbjct 17509704 CCGGGGTTCAATTCCCCGTCGGGGAGAGA 17509732 Score = 89.7 bits (98), Expect = 7e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 17510021 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 17510080 Query 8718 CCCGACG 8724 | ||||| Sbjct 17510081 CACGACG 17510087 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 139358 CGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTATACTA 139417 ||||| ||| | |||||||||||||||| | |||| |||||||| |||||||||||||| Sbjct 17510087 CGTCGTGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTATACTA 17510028 Query 139418 ACGAGGATTTTGGTACAC 139435 |||||||| | | |||| Sbjct 17510027 TCGAGGATTGTTGAACAC 17510010 Score = 84.2 bits (92), Expect = 3e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 11716 GTTGTGTAACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGA 11774 ||||||| || |||||| |||||||||||| ||||| |||| ||||| | ||||||| Sbjct 17510007 GTTGTGTTCAACAATCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGA 17510066 Query 11775 CCGGGGTTCGATTCCCCGACG 11795 ||||||||| ||||| ||||| Sbjct 17510067 CCGGGGTTCAATTCCACGACG 17510087 >seq3 Length=21835025 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 12445427 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 12445368 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 12445367 CCCGTCGGGGAG 12445356 Score = 89.7 bits (98), Expect = 7e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| ||| Sbjct 12445428 GTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATT 12445369 Query 11788 CCCCGACGAGGAGGGA 11803 ||||| || |||| || Sbjct 12445368 CCCCGTCGGGGAGAGA 12445353 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| | |||||||||||||||| | |||| |||||||| ||||||||| Sbjct 12445356 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 12445415 Query 139413 TACTAACGAGGATTTTGGTACACGCT 139438 ||||| |||||| || || ||||| Sbjct 12445416 TACTATCGAGGACGTTAATAAACGCT 12445441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652779083010320