Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3 127 2e-24 seq2 125 7e-24 seq4 91.5 1e-13 >seq3 Length=21835025 Score = 127 bits (140), Expect = 2e-24 Identities = 154/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| ||||| |||||||||||| || ||| ||| | || || || Sbjct 1955465 AAATGAAGAGTAGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGACCA-TCTTCCAG 1955407 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| ||| | || || |||||||| || || || |||||||||||||| || Sbjct 1955406 TTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGAAT 1955347 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| || |||| |||||||| || | |||| ||| ||||| Sbjct 1955346 CTTAGCCTTCACGTTCTCAATGGTATCGGATGGCTCCACCTCCAGAGTGATGGTCTTGCC 1955287 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| || ||||| Sbjct 1955286 AGTCAGGGTCTTCACGAAGATTTGCAT 1955260 Score = 123 bits (136), Expect = 2e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| |||||||| || || ||| ||| | || || || | Sbjct 1955061 ATGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAAGTGCGACCA-TCTTCCAGTT 1955003 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || || |||||||| || || || ||||||||||| || |||| Sbjct 1955002 GCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTATCTTGAATCT 1954943 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| || |||| ||||| || || | ||||| ||| || || | Sbjct 1954942 TGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAGGGTGATGGTCTTTCCCG 1954883 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| |||||| ||||| |||||||| Sbjct 1954882 TCAAAGTTTTAACGAAGATCTGCAT 1954858 >seq2 Length=4222574 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| | ||| | | | ||||| ||||||||||| Sbjct 180265 GTGGACTCCTTCTGAATGTTGTAGTCGGATAGAGTGCGTCCA-TCCTCCAGCTGCTTGCC 180207 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || |||||||| || || ||||| ||||| ||||| |||||| ||| Sbjct 180206 GGCAAAGATCAGACGCTGCTGATCTGGTGGGATCCCTTCTTTGTCCTGGATCTTGGCCTT 180147 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| | |||||| || || | ||| | ||| |||||||| ||||| Sbjct 180146 GACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTAATGGTCTTGCCGGTGAGAGT 180087 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| || ||||| Sbjct 180086 TTTMACGAAGATTTGCAT 180069 >seq4 Length=22154029 Score = 91.5 bits (100), Expect = 1e-13 Identities = 295/451 (65%), Gaps = 13/451 (3%) Strand=Plus/Plus Query 120370 TTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAACGGGTTG 120429 ||||| |||||||| |||||||| |||| ||| || | | ||| || ||| || || Sbjct 3240345 TTCTCGAAAAAGTTAGTTTTGCCATCCAGCGAGATCATCTCCATGAAGGTGAATGGATTC 3240404 Query 120430 CTCGCGTTAAAGTATTTCGGCTGGCCCAACTGT-ACGAGCAGTCGGTCCGCTACAAACTC 120488 ||| || || |||| | | || | | || ||||| || ||||| ||||| || Sbjct 3240405 TTCGTATTGTAG-ATTTTGCCAACACCGAGTTCCACCAGCAGACGATCCGCCACAAATTC 3240463 Query 120489 AATGTACTCGCACATGGACTGCGCG-TTCATGCCCAGCAACGCCACCGGCAACGCCGACG 120547 ||| || | | |||| | ||| | |||||||| | ||| || |||| || | Sbjct 3240464 AATATATTGGGACATCAA-TGCACAATTCATGCCAATCAAATTGACGGGCAGAGCATCTG 3240522 Query 120548 TGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGAGCATAGTGT---GGC 120604 ||| |||||| | ||||||| || || ||| || || ||| ||| | ||| Sbjct 3240523 TGAGAAACTCTTGCTCAATGGTAACAGCATCCGAGATAATCTCGATGATACGCTCCCGGC 3240582 Query 120605 CGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGTCCGTGTGCAGGC 120664 |||| ||| |||| ||| | || | |||||||| |||| || Sbjct 3240583 TGGGCCG-TTGCACCAAATGC-----CGGAACATCATGACAGCAAAGTCACAATGCAAGC 3240636 Query 120665 CCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCT 120724 |||||||||| || |||| ||| ||| |||||||| || ||||| | || | ||| Sbjct 3240637 CCTCGTCGCGTGAGATCAACTCATTGGAGAACGTCAGACCTGGCATCAGACCACGCTTCT 3240696 Query 120725 TGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGG 120784 | | | || || | ||||||||| || ||||| | ||||||||| ||||| | Sbjct 3240697 TCAGCCAAAAGATCGAGGCAAAGCTTCCGCTGAAGAAGATTCCCTCCACGGCAGCAAACG 3240756 Query 120785 CGACCATGCGCTCGGCCAACGTCGCCGTCTT 120815 ||| || | |||| | || |||||| ||| Sbjct 3240757 CGATAATTCTCTCGCCAAAGTTCGCCGCCTT 3240787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483372137653720