Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2 197 3e-45 >seq2 Length=4222574 Score = 197 bits (218), Expect = 3e-45 Identities = 442/656 (67%), Gaps = 17/656 (3%) Strand=Plus/Plus Query 110510 ACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGA 110569 ||||||| |||| |||||||| || || |||||| |||||||| |||| | | Sbjct 4214407 ACAATTGTCTTCATGCTTTCTCTTAACTATAGTGTCTGATTCAATTGAAGGGATTTTTAA 4214466 Query 110570 TGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCA 110629 | || | || || | ||||| || | || || ||||| | | ||||| Sbjct 4214467 ATCAGTTGAGCAATGCGCAATGATTTCAAAGTCGGCAGGTGGCATTGGACTGAATGTTCA 4214526 Query 110630 TGATATTCGCTCAAAAGGAGCA--AATATC-GCAACAGCGAAGGGTGCTTCAACTGGACT 110686 |||||| | |||||| || ||| | | ||| ||| ||| |||||| |||| | Sbjct 4214527 CTGTATTCGAGCTAAAGGAACATCAATTTGTGGAAC---GAACGGTACTTCAAATGGATT 4214583 Query 110687 TGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGG---TGGTAA 110743 || |||||||||||||| || || | ||| ||||| |||| || |||||| Sbjct 4214584 AGTACCAATGTTAAGAGTTTTTAATAATGTGGCACGTTATGTCGATCAGGGCGGTGGTAA 4214643 Query 110744 GAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTT 110803 ||| ||| |||||||||| || | || |||||||| |||||| | || ||||| || Sbjct 4214644 AAGACCTGGAGCATTTGCTATTTACTTAGAGCCTTGGCACTCAGATGTCTTCGAATTTTT 4214703 Query 110804 AGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAAT 110863 || ||| |||||| ||| || ||||| | || || ||| | |||| |||| | Sbjct 4214704 GGACCTTAAAAAAAATACTGGAAAGGAGGAACATCGGGCGCGCGATCTGTTTTTTGCATT 4214763 Query 110864 GTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTG 110923 ||||||| | ||| | || |||||||||||| ||| |||| ||||| || ||||| Sbjct 4214764 GTGGATTCCTGATCTTTTTATGAAACGTGTTGAAGCCAATGAAGATTGGTCACTAATGTG 4214823 Query 110924 TCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGA 110983 ||| ||| | |||||| || | ||||| | || |||| |||||| ||||||| Sbjct 4214824 TCCACATAAATGTCCTGGCCTTCCAGATGTTTGGGGTGAAGATTTTGAAAACCTTTATAT 4214883 Query 110984 AAAATATGAAAAAGAAGG-CAAGTTTCGCAAACAA---ATTCCAGCTCAAGAACTTTGGT 111039 ||||||||| ||||||| | || || || | | ||| |||||| ||||||| Sbjct 4214884 CAAATATGAACAAGAAGGACGAG---CG-AATCGAGTTATTAAGGCTCAATCTCTTTGGT 4214939 Query 111040 TCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATA 111099 | || | ||||| ||||| || || || || || || || || | ||| ||| Sbjct 4214940 TTGCCATTATCGAATCTCAAGTAGAGACGGGTACACCCTACATGTTATTTAAGGATTCGT 4214999 Query 111100 TTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 ||| | ||| || ||| ||| | ||||| || || | |||||| ||||| Sbjct 4215000 GTAACAGAAAAAGCAACCAACAAAATGTTGGAACTATAAAATGCAGTAATCTGTGC 4215055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186690345767933