Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 8e-15 >seq3 Length=21835025 Score = 96.9 bits (106), Expect = 8e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||| |||| ||||| || || || | || Sbjct 1955275 AAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCATCCGATACCATTGAGAAC 1955334 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || ||||| ||| || || || | || |||||| Sbjct 1955335 GTGAAGGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAGCAGCGTCTGATCTTC 1955394 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| |||||||||| | || ||| |||||||||| | ||||| |||||| Sbjct 1955395 GCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCCGATTACAATATTCAGAAGGAGTCT 1955454 Query 206365 ACTCTTCA 206372 |||||||| Sbjct 1955455 ACTCTTCA 1955462 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || ||||| || ||||| |||| || || ||| || || | || Sbjct 1954873 AAAACTTTGACGGGAAAGACCATCACCCTGGAGGTTGAGCCTTCCGATACCATTGAGAAC 1954932 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| || ||||| ||| || || || | || |||||| Sbjct 1954933 GTCAAGGCCAAGATTCAAGATAAGGAAGGCATTCCCCCAGATCAGCAGCGTCTGATCTTC 1954992 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| |||||||||| | |||||| | || ||||| ||||||| ||||| Sbjct 1954993 GCCGGCAAGCAACTGGAAGATGGTCGCACTTTGTCTGACTACAATATCCAGAAGGAGTCG 1955052 Query 206365 ACTCTTCACCTTGT 206378 || || || || || Sbjct 1955053 ACCCTCCATCTGGT 1955066 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || || || || || ||||| ||||||| ||| ||||||| |||||| | ||||||||| Sbjct 1955066 ACCAGATGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAAGTGCGACCATCTTCC 1955007 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || ||||| ||||||||||| || || || ||| Sbjct 1955006 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGA 1954974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181698860837813