Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2 131 2e-25 >seq2 Length=4222574 Score = 131 bits (144), Expect = 2e-25 Identities = 486/750 (65%), Gaps = 29/750 (4%) Strand=Plus/Minus Query 146890 TGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAA 146949 || || || |||||||| ||||| | || || ||||| || | || ||| || Sbjct 4215684 TGGTTTACTACTTGAAATTCGCCGGACAATACTCGTCTTGTGTAAATGTTTGAAGTATAA 4215625 Query 146950 GGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCC 147009 ||||| || |||||||| ||||| | |||||| || || | ||| ||||||||| || Sbjct 4215624 GGCTCGAACGACTCATTGTTGCCCATTATTTGTGCAGTAGATGCTGTAGGCATGGGAGCA 4215565 Query 147010 ACCAACAATGAATTTCGCAGACCGTA---CGC-ACGGATGTTGTCCTTCAAAGTTTGCCA 147065 || | || ||||||| | ||| | ||| | ||| || || | | | ||| Sbjct 4215564 ACGAGTAAAGAATTTCTGACACCATGTTGCGCTATCGATTTT----TTAAGAACATCCCA 4215509 Query 147066 GTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGC 147125 |||||| | | |||| |||||||| || ||||| | | |||| || | Sbjct 4215508 GTCCCAAAGATCTGTTGGCGATTTATTCCACATATCATACTGCAAAATTCCTTTGCTTAC 4215449 Query 147126 GGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTC 147185 ||||| ||| | | || || ||| || | || || ||||||||||| || || Sbjct 4215448 TGGACTTCCAACATAAGTCTCATATGGTCCATCTCTTTGAGCTAATTCACAGCTGGCTTC 4215389 Query 147186 GAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCT 147245 || |||||||||||||| |||||| || || | |||| | || || | || Sbjct 4215388 CAGAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAAAAGAAATGCATCATGACT 4215329 Query 147246 CTCGTAAGGCATAC-GCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGA 147304 ||||||| |||| ||| | | || || || || || || |||| || | || | Sbjct 4215328 TTCGTAAGA-ATACCGCATTAATATTAACGCGTCCGCAAACCCTTGGACTCCAATTCCAA 4215270 Query 147305 TAGGTCGATGCT-----TTTCGTTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCG 147359 |||| || || ||| || | ||||| | || | ||| |||| || Sbjct 4215269 TAGGACGGTGGCGTAAATTTGATTTTTTAGCTTC----TGGCAAAGGG-TAGTAATTTAT 4215215 Query 147360 ATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAA 147419 |||||| || ||||| | ||| | |||| |||||||| | ||| || || | || Sbjct 4215214 ATCAATTATTTTGTTTAAGTTTTTCGTAACAATTTTAGTTACTTCTTTAAGCTTTTTAAA 4215155 Query 147420 ATCATAAGTCCCGTCTT-CGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGC 147478 ||||| | || | || ||| || ||| | || || ||||||| ||| | Sbjct 4215154 GTCATACGATTTTTCATGCGTCACAAACATATTAAGT----GCAATTGACGCCAAATTAC 4215099 Query 147479 AGACGGCCGTCTCTTCGGCGTCGCTG--TACTGCACGATTTCGGCGCACAGGTTGCTGCA 147536 | || || | || || | || |||| |||| || ||||| | |||||| || ||||| Sbjct 4215098 ACACAGCTATTTCATCTG-GT-GCTGAATACTCAACTATTTCTGTGCACAGATTACTGCA 4215041 Query 147537 TTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCAT 147596 |||||| ||| | |||||| || |||||||| | || |||| || || || | ||| Sbjct 4215040 TTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACACGAATCCTTAAATAACAT 4214981 Query 147597 GTACGGTCCGCCGGTCTCGACTTGCGTTTC 147626 ||| ||| || ||||| ||||| | ||| Sbjct 4214980 GTAGGGTGTACCCGTCTCTACTTGAGATTC 4214951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476563223125080