Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq2 120 3e-22
>seq2
Length=4222574
Score = 120 bits (132), Expect = 3e-22
Identities = 696/1093 (64%), Gaps = 42/1093 (4%)
Strand=Plus/Minus
Query 136639 ACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTT 136698
|| |||||||| || | ||| || || ||||| || | ||||| |||||||| |||||
Sbjct 4216023 ACAGTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTA 4215964
Query 136699 AAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCC 136758
| ||| | ||| |||||| ||| || |||| || || ||| | || || ||
Sbjct 4215963 AGACCTGCTTTCCACGAATAAAAATGGATTGATGTTAATTTTCCATAATTAGGTTCAGCT 4215904
Query 136759 ACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTC 136818
||| || ||| | || || || ||||| || | | ||| | ||| || ||||| ||
Sbjct 4215903 ACGTGAATATTGAAAGACTGACTTTGATCAATAAAGGCTCCTCTGTCAGCCGCCATTTTT 4215844
Query 136819 AATAGTACTTTTTGCTTAATT-TCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCGG 136877
| |||| ||| | || | ||||| | |||||| | | || | | |||
Sbjct 4215843 A-TAGTTGATTTAATTGAAATCTCCCACACTGTTTTATACAAATCACGAATTTCCTTCGG 4215785
Query 136878 AATTTCATCGATATTCTGTACAGATCCG----TTGTT----TTTGATGATTTTCATCATG 136929
|||| || ||||| |||| || || ||| | |||||| |||||||| |
Sbjct 4215784 AATTGATTCAATATTTTGTATTGAACCACGATTTGATATTATTTGAT--TTTTCATCTCG 4215727
Query 136930 AGATCAGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTTACTACT 136989
||| | | | | ||| | | | | | || | || || |||||||||
Sbjct 4215726 TCATCCCACAAATCAA-GTT-----CGGTTAAATCACGGAGTAAGTGATGGTTTACTACT 4215673
Query 136990 TGATATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGAT 137049
||| ||||||| || | |||| | | ||| | || ||| | |||||||||||
Sbjct 4215672 TGAAATTCGCCGGACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGAC 4215613
Query 137050 TCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAA 137109
|| ||||| |||| || |||||||| | ||||| |||||| ||| | | || |||
Sbjct 4215612 TCATTGTTGCCCATTATTTGTGCAGTAGATGCTGTAGGCATGGGAGCAACGAGTAAAGAA 4215553
Query 137110 TTCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAGAT-TGTT 137168
|| | | ||| ||| || | || || || | | ||||| ||| |||| ||||
Sbjct 4215552 TTTCTGACACCATGTTGCGCTATCGATTTTTTAAGAACATCCCAGTCCCAAAGATCTGTT 4215493
Query 137169 --CGATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCT 137226
||||| ||||||||| |||| ||||||||| ||| ||| | |||||| |
Sbjct 4215492 GGCGATT------TATTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTTCCA 4215439
Query 137227 GCATAAGAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGCGCCA 137286
|||||| ||||||| ||| | || || | |||| || | || || |||
Sbjct 4215438 ACATAAGTCTCATATGGTCCATCTCTTTGAGCTAATTCACAGCTGGCTTCCAGAGCTCCA 4215379
Query 137287 TAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGGC 137346
||||| ||||||||| | || | ||| || || || || || ||||| |
Sbjct 4215378 TAGTATATAGTTTCGAAAATCTGCTGATTTAAAAGAAATGCATCATGACTTTCGTA-AGA 4215320
Query 137347 ATATC-CAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTGTG 137405
||| | || || || || || |||| ||||| | || || || ||||| | |||
Sbjct 4215319 ATACCGCATTAATATTAACGCGTCCGCAAACCCTTGGACTCCAATTCCAATAGGACGGTG 4215260
Query 137406 TTTAAAATTTGATATTTGAGC-GCTAACAAGCGGATAAAAGTTTGCGTCTATAATTCTAT 137464
||||||||| ||| ||| || ||| || || | ||| || || ||| | |
Sbjct 4215259 GCGTAAATTTGATTTTTTAGCTTCTGGCAA-AGGGTAGTAATTTATATCAATTATTTTGT 4215201
Query 137465 TGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGAAATC-GAAGCTTTTA 137523
| | || || ||||| | | | | |||| | ||| || || || | | ||||
Sbjct 4215200 TTAAGTTTTTCGTAACAATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATACGATTTTT 4215141
Query 137524 GACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGCCGTTTCT 137583
| | || | |||| |||| | ||||| || || || || || || || ||||
Sbjct 4215140 CA---TGCGTCA-CAAACATATTAAGTGCAATTGACGCCAAATTACACACAGCTATTTC- 4215086
Query 137584 GTATTGTCGCTG--TATTGTACAATTTCGGCGCAAAGATTGCTGTTTCGGATCACTCCCA 137641
| | || |||| || | || ||||| | ||| ||||| ||| | || ||| |
Sbjct 4215085 ATCTGGT-GCTGAATACTCAACTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAA 4215027
Query 137642 AATTCTTTTGATTG-TTTTTCTCGTTGACGTGATCTTTATATATCATATACGGAGTTCCG 137700
||| | ||| ||| ||||||| | ||| ||| ||| ||| ||| || || || ||
Sbjct 4215026 CATTTTGTTGGTTGCTTTTTCTGTTACACG-AATCCTTAAATAACATGTAGGGTGTACCC 4214968
Query 137701 GTTTCGACTTGAG 137713
|| || |||||||
Sbjct 4214967 GTCTCTACTTGAG 4214955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445049595684960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |