Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq2 120 3e-22 >seq2 Length=4222574 Score = 120 bits (132), Expect = 3e-22 Identities = 696/1093 (64%), Gaps = 42/1093 (4%) Strand=Plus/Minus Query 136639 ACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTT 136698 || |||||||| || | ||| || || ||||| || | ||||| |||||||| ||||| Sbjct 4216023 ACAGTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTA 4215964 Query 136699 AAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCC 136758 | ||| | ||| |||||| ||| || |||| || || ||| | || || || Sbjct 4215963 AGACCTGCTTTCCACGAATAAAAATGGATTGATGTTAATTTTCCATAATTAGGTTCAGCT 4215904 Query 136759 ACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTC 136818 ||| || ||| | || || || ||||| || | | ||| | ||| || ||||| || Sbjct 4215903 ACGTGAATATTGAAAGACTGACTTTGATCAATAAAGGCTCCTCTGTCAGCCGCCATTTTT 4215844 Query 136819 AATAGTACTTTTTGCTTAATT-TCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCGG 136877 | |||| ||| | || | ||||| | |||||| | | || | | ||| Sbjct 4215843 A-TAGTTGATTTAATTGAAATCTCCCACACTGTTTTATACAAATCACGAATTTCCTTCGG 4215785 Query 136878 AATTTCATCGATATTCTGTACAGATCCG----TTGTT----TTTGATGATTTTCATCATG 136929 |||| || ||||| |||| || || ||| | |||||| |||||||| | Sbjct 4215784 AATTGATTCAATATTTTGTATTGAACCACGATTTGATATTATTTGAT--TTTTCATCTCG 4215727 Query 136930 AGATCAGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTTACTACT 136989 ||| | | | | ||| | | | | | || | || || ||||||||| Sbjct 4215726 TCATCCCACAAATCAA-GTT-----CGGTTAAATCACGGAGTAAGTGATGGTTTACTACT 4215673 Query 136990 TGATATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGAT 137049 ||| ||||||| || | |||| | | ||| | || ||| | ||||||||||| Sbjct 4215672 TGAAATTCGCCGGACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGAC 4215613 Query 137050 TCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAA 137109 || ||||| |||| || |||||||| | ||||| |||||| ||| | | || ||| Sbjct 4215612 TCATTGTTGCCCATTATTTGTGCAGTAGATGCTGTAGGCATGGGAGCAACGAGTAAAGAA 4215553 Query 137110 TTCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAGAT-TGTT 137168 || | | ||| ||| || | || || || | | ||||| ||| |||| |||| Sbjct 4215552 TTTCTGACACCATGTTGCGCTATCGATTTTTTAAGAACATCCCAGTCCCAAAGATCTGTT 4215493 Query 137169 --CGATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCT 137226 ||||| ||||||||| |||| ||||||||| ||| ||| | |||||| | Sbjct 4215492 GGCGATT------TATTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTTCCA 4215439 Query 137227 GCATAAGAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGCGCCA 137286 |||||| ||||||| ||| | || || | |||| || | || || ||| Sbjct 4215438 ACATAAGTCTCATATGGTCCATCTCTTTGAGCTAATTCACAGCTGGCTTCCAGAGCTCCA 4215379 Query 137287 TAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGGC 137346 ||||| ||||||||| | || | ||| || || || || || ||||| | Sbjct 4215378 TAGTATATAGTTTCGAAAATCTGCTGATTTAAAAGAAATGCATCATGACTTTCGTA-AGA 4215320 Query 137347 ATATC-CAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTGTG 137405 ||| | || || || || || |||| ||||| | || || || ||||| | ||| Sbjct 4215319 ATACCGCATTAATATTAACGCGTCCGCAAACCCTTGGACTCCAATTCCAATAGGACGGTG 4215260 Query 137406 TTTAAAATTTGATATTTGAGC-GCTAACAAGCGGATAAAAGTTTGCGTCTATAATTCTAT 137464 ||||||||| ||| ||| || ||| || || | ||| || || ||| | | Sbjct 4215259 GCGTAAATTTGATTTTTTAGCTTCTGGCAA-AGGGTAGTAATTTATATCAATTATTTTGT 4215201 Query 137465 TGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGAAATC-GAAGCTTTTA 137523 | | || || ||||| | | | | |||| | ||| || || || | | |||| Sbjct 4215200 TTAAGTTTTTCGTAACAATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATACGATTTTT 4215141 Query 137524 GACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGCCGTTTCT 137583 | | || | |||| |||| | ||||| || || || || || || || |||| Sbjct 4215140 CA---TGCGTCA-CAAACATATTAAGTGCAATTGACGCCAAATTACACACAGCTATTTC- 4215086 Query 137584 GTATTGTCGCTG--TATTGTACAATTTCGGCGCAAAGATTGCTGTTTCGGATCACTCCCA 137641 | | || |||| || | || ||||| | ||| ||||| ||| | || ||| | Sbjct 4215085 ATCTGGT-GCTGAATACTCAACTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAA 4215027 Query 137642 AATTCTTTTGATTG-TTTTTCTCGTTGACGTGATCTTTATATATCATATACGGAGTTCCG 137700 ||| | ||| ||| ||||||| | ||| ||| ||| ||| ||| || || || || Sbjct 4215026 CATTTTGTTGGTTGCTTTTTCTGTTACACG-AATCCTTAAATAACATGTAGGGTGTACCC 4214968 Query 137701 GTTTCGACTTGAG 137713 || || ||||||| Sbjct 4214967 GTCTCTACTTGAG 4214955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445049595684960