Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq4 136 6e-26
seq6 89.7 7e-12
>seq4
Length=22154029
Score = 136 bits (150), Expect = 6e-26
Identities = 324/482 (67%), Gaps = 6/482 (1%)
Strand=Plus/Minus
Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855
||||||||||||| || ||||| | |||||||| || ||| | || || |||
Sbjct 3241149 AGGCCGAGGCCTCATTCTGGACTGTGGAGGAGGTGGATCTCTCCAAGGATTTGGCGGACT 3241090
Query 1455856 GGGTGTCGCTGAGC-GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGC 1455914
||| || | | | || ||||||| || || ||| ||| || |||||||| ||| ||
Sbjct 3241089 GGGCA-CGTTTAACTGATAACGAGCGTCACTTTATCTCGCATGTGCTCGCCTTCTTT-GC 3241032
Query 1455915 CGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATT 1455974
|||| ||||||||| || ||||| |||| || ||||| | | ||||| ||| |
Sbjct 3241031 CGCCTCCGATGGCATTGTTAATGAGAATCTGGTCGAGCGCTTCAGCCAGGAGGTGCAAAT 3240972
Query 1455975 GCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAAC 1456034
| || || |||| || || || || || || ||||| || || | ||||| || |
Sbjct 3240971 AACCGAAGCTCGTTGTTTCTATGGCTTTCAAATTGCCATGGAGAATGTGCACTCGGAGAT 3240912
Query 1456035 CTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCG 1456094
||| | |||||||| || || | | ||| || | | ||| | || ||
Sbjct 3240911 GTACAGCGTGCTGATCGATACATATATTAGGGATCCACAGCAAAGGGATTATCTGTTCAA 3240852
Query 1456095 CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAA 1456154
||||| || || |||| | || | | |||||| || |||||| | |||||
Sbjct 3240851 TGCCATTGAAACAATGCCCGCTGTCAAGCGAAAGGCTGATTGGGCGCTCTCTTGGATTT- 3240793
Query 1456155 CAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATC 1456213
|| || ||| ||| |||||| |||| | | ||| ||||| || || ||||| |||
Sbjct 3240792 CATCGAAGGCGGCGA-ACTTTGGCGAGAGAATTATCGCGTTTGCTGCCGTGGAGGGAATC 3240734
Query 1456214 TTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273
|| ||| || || || | | ||||||||||| |||||||| || || ||||| |||
Sbjct 3240733 TTCTTCAGCGGAAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTGATGCCAGGT 3240674
Query 1456274 CT 1456275
||
Sbjct 3240673 CT 3240672
>seq6
Length=21059900
Score = 89.7 bits (98), Expect = 7e-12
Identities = 121/169 (72%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 1818069 ATGGTAAAGGGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCACG 1818128
||| | || |||||||| |||| || ||||| || ||| | ||| | ||||||
Sbjct 2977017 ATGTTGAATGGCGTCACCAGCTCCGGGAAGGTTAGGTTCTGTGCTATCGAACGTGGCACG 2976958
Query 1818129 CCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTG 1818188
|| |||| ||| ||| | | ||| ||||| ||||||| | || || | |||| |
Sbjct 2976957 CCGACCTGGTCGATGCGCAAATTGGGATCGGGCGTGATGACAGTCCGTGCAGAGAAGTCG 2976898
Query 1818189 ACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGA 1818237
|| ||||| ||||| |||| || ||||| | ||||||||||||||||
Sbjct 2976897 ACACGCTTTCCCATCAAATTACCACGGATACGCCCCTCCTTGCCCTTGA 2976849
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177034473348586
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |