Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4 136 6e-26 seq6 89.7 7e-12 >seq4 Length=22154029 Score = 136 bits (150), Expect = 6e-26 Identities = 324/482 (67%), Gaps = 6/482 (1%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855 ||||||||||||| || ||||| | |||||||| || ||| | || || ||| Sbjct 3241149 AGGCCGAGGCCTCATTCTGGACTGTGGAGGAGGTGGATCTCTCCAAGGATTTGGCGGACT 3241090 Query 1455856 GGGTGTCGCTGAGC-GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGC 1455914 ||| || | | | || ||||||| || || ||| ||| || |||||||| ||| || Sbjct 3241089 GGGCA-CGTTTAACTGATAACGAGCGTCACTTTATCTCGCATGTGCTCGCCTTCTTT-GC 3241032 Query 1455915 CGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATT 1455974 |||| ||||||||| || ||||| |||| || ||||| | | ||||| ||| | Sbjct 3241031 CGCCTCCGATGGCATTGTTAATGAGAATCTGGTCGAGCGCTTCAGCCAGGAGGTGCAAAT 3240972 Query 1455975 GCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAAC 1456034 | || || |||| || || || || || || ||||| || || | ||||| || | Sbjct 3240971 AACCGAAGCTCGTTGTTTCTATGGCTTTCAAATTGCCATGGAGAATGTGCACTCGGAGAT 3240912 Query 1456035 CTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCG 1456094 ||| | |||||||| || || | | ||| || | | ||| | || || Sbjct 3240911 GTACAGCGTGCTGATCGATACATATATTAGGGATCCACAGCAAAGGGATTATCTGTTCAA 3240852 Query 1456095 CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAA 1456154 ||||| || || |||| | || | | |||||| || |||||| | ||||| Sbjct 3240851 TGCCATTGAAACAATGCCCGCTGTCAAGCGAAAGGCTGATTGGGCGCTCTCTTGGATTT- 3240793 Query 1456155 CAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATC 1456213 || || ||| ||| |||||| |||| | | ||| ||||| || || ||||| ||| Sbjct 3240792 CATCGAAGGCGGCGA-ACTTTGGCGAGAGAATTATCGCGTTTGCTGCCGTGGAGGGAATC 3240734 Query 1456214 TTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273 || ||| || || || | | ||||||||||| |||||||| || || ||||| ||| Sbjct 3240733 TTCTTCAGCGGAAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTGATGCCAGGT 3240674 Query 1456274 CT 1456275 || Sbjct 3240673 CT 3240672 >seq6 Length=21059900 Score = 89.7 bits (98), Expect = 7e-12 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 1818069 ATGGTAAAGGGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCACG 1818128 ||| | || |||||||| |||| || ||||| || ||| | ||| | |||||| Sbjct 2977017 ATGTTGAATGGCGTCACCAGCTCCGGGAAGGTTAGGTTCTGTGCTATCGAACGTGGCACG 2976958 Query 1818129 CCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTG 1818188 || |||| ||| ||| | | ||| ||||| ||||||| | || || | |||| | Sbjct 2976957 CCGACCTGGTCGATGCGCAAATTGGGATCGGGCGTGATGACAGTCCGTGCAGAGAAGTCG 2976898 Query 1818189 ACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGA 1818237 || ||||| ||||| |||| || ||||| | |||||||||||||||| Sbjct 2976897 ACACGCTTTCCCATCAAATTACCACGGATACGCCCCTCCTTGCCCTTGA 2976849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177034473348586