Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq4 118 1e-21 seq6 109 5e-19 seq2 91.5 1e-13 seq3 87.8 2e-12 >seq4 Length=22154029 Score = 118 bits (130), Expect = 1e-21 Identities = 211/303 (70%), Gaps = 4/303 (1%) Strand=Plus/Plus Query 44130 TTGTGGAACGCTGCCCAAACACAACTGTTGCGAGAAGGTAAAATGCACCAATACATGCGT 44189 ||||||||| | ||||| ||| ||| || || || ||||||||| | | |||| Sbjct 611707 TTGTGGAACTCGGCCCAGCTACAGCTGGTGAAGGAGGGCAAAATGCACGGTTTCTTGCGC 611766 Query 44190 ATGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAAGATGCGCAAACCGCGCTCGTTCAT 44249 ||||||||| ||| ||||| || || ||| | ||| || | ||||| | || Sbjct 611767 ATGTATTGGGCCAAAAAGATTTTAGAATGGACCGAAACGCCGGAGCAGGCGCTAGAGTAT 611826 Query 44250 GCCAT-CTATCTGAACGACAAGTACAGTTTGGACGGTCGCGACCCCAACGGGTACGTAGG 44308 ||| |||| ||||||| ||||||||| |||| || ||||| || || || ||||| || Sbjct 611827 AGCATACTAT-TGAACGATAAGTACAGTCTGGATGGGCGCGATCCGAATGGCTACGTTGG 611885 Query 44309 ATGTATGTGGTCCATTTGCGGTGTCCACGA-CAGGGCGTGGCGAGAGCTACCCATCTACG 44367 || ||||||||||| | || | ||||| || ||| ||| || | | || | || Sbjct 611886 TTGCATGTGGTCCATCGGTGGCATTCACGACCAAGGC-TGGAAGGAACGCGCGATATTCG 611944 Query 44368 GCAAAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATGTAAAAACCTATA 44427 | || | ||||| |||||||| | || ||| | ||||| ||||| || ||||| Sbjct 611945 GTAAGATTCGCTATATGAACTATCAAGGCTGCAAGCGCAAGTTCGATGTCAATGCCTATG 612004 Query 44428 TTA 44430 ||| Sbjct 612005 TTA 612007 >seq6 Length=21059900 Score = 109 bits (120), Expect = 5e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 35503 TTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTA 35562 || ||| || ||||||| | | |||||| ||||| ||| |||||| ||||||||||| Sbjct 7471130 TTAATTGCCTCCACGTAGACGGAGCACCAAGTGTAAAGTAGACTCCTTCTGAATGTTGTA 7471189 Query 35563 ATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 |||| || || ||| | || ||||||||||| || || || ||||| |||||||| || Sbjct 7471190 GTCGGACAGAGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATC 7471249 Query 35623 CGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 | |||| | ||||||||| |||||| Sbjct 7471250 TGGGGGAATACCCTCCTTGTCTTGGATCTT 7471279 >seq2 Length=4222574 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||| || || || || |||||| ||||||||||| |||| Sbjct 180295 CCACCACGCAGACGGAGCACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGAT 180236 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || ||||| |||| |||||||| || | || Sbjct 180235 AGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGG 180176 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | || |||||| |||||| ||| | | | | | ||||| | || ||| Sbjct 180175 ATCCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 180116 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGT 35741 |||| || || || || || || | |||||| || || || |||||| ||| Sbjct 180115 TCCAAGGTAATGGTCTTGCCGGTGAGAGTTTTMACGAAGATTTGCATTTTGT 180064 >seq3 Length=21835025 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| || | ||| || || | || ||||| ||||| || || || Sbjct 1955049 CTCCTTCTGGATATTGTAGTCAGACAAAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAA 1954990 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| |||||||| || | |||| || ||||| || ||||| ||| | | Sbjct 1954989 GATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTATCTTGAATCTTGGCCTTGACGTT 1954930 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || ||| | || ||||||| ||||| || || |||||||||||||| || Sbjct 1954929 CTCAATGGTATCGGAAGGCTCAACCTCCAGGGTGATGGTCTTTCCCGTCAAAGTTTTAAC 1954870 Query 35725 AAATATCTGCATTCTG 35740 || ||||||||| || Sbjct 1954869 GAAGATCTGCATTTTG 1954854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450748221989240