Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2 134 1e-26 seq3 122 9e-23 seq6 87.8 2e-12 >seq2 Length=4222574 Score = 134 bits (148), Expect = 1e-26 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| | ||||| ||||| ||||||||||||||| | ||| | Sbjct 180286 AGACGGAGCACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGATAGAGTGCGT 180227 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| ||||| |||| |||||||||||| || || || |||||| Sbjct 180226 CCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGGATCCCTTCT 180167 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| || | ||||| || | || || || | ||| Sbjct 180166 TTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTA 180107 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGT 134718 ||||| || ||||| | |||||| ||||| ||||||||||||| Sbjct 180106 ATGGTCTTGCCGGTGAGAGTTTTMACGAAGATTTGCATTTTGT 180064 >seq3 Length=21835025 Score = 122 bits (134), Expect = 9e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTC 134563 || || || || || || ||||| || || |||||||| | ||| | || || || || Sbjct 1955066 ACCAGATGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAAG-TGCGACCATCTTC 1955008 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 || || ||||| || || |||| |||||||||||| || || |||||||| || ||||| Sbjct 1955007 CAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTATCTTG 1954948 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 ||| || ||||| || | || ||||| | || || || || || ||||| || Sbjct 1954947 AATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAGGGTGATGGTCTT 1954888 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || |||||||||||||| || ||||||||| Sbjct 1954887 TCCCGTCAAAGTTTTAACGAAGATCTGCATTTTG 1954854 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || || ||||| ||||| ||||| ||| | |||| || || || || || Sbjct 1955462 TGAAGAGTAGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGACCATCTTCCAGTTGC 1955403 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 ||||| || || |||| |||||||||||| || || |||||||| || || ||||| || Sbjct 1955402 TTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGAATCTTA 1955343 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | || ||||| | ||||| || ||||| ||||| || || || Sbjct 1955342 GCCTTCACGTTCTCAATGGTATCGGATGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTC 1955283 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| |||||||| Sbjct 1955282 AGGGTCTTCACGAAGATTTGCAT 1955260 >seq6 Length=21059900 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 || ||||| | || || | ||| | ||||| || || ||||| ||||||||||||||| Sbjct 7471134 TTGCCTCCACGTAGACGGAGCACCAAGTGTAAAGTAGACTCCTTCTGAATGTTGTAGTCG 7471193 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | ||| | || || ||||| ||||| || || ||||||||||||||||| || Sbjct 7471194 GACAGAGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGG 7471253 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTT 134629 || || || || || ||||| || || Sbjct 7471254 GGAATACCCTCCTTGTCTTGGATCTT 7471279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505347525333560