Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2 607 1e-168 seq4 241 2e-58 >seq2 Length=4222574 Score = 607 bits (672), Expect = 1e-168 Identities = 1275/1880 (68%), Gaps = 32/1880 (2%) Strand=Plus/Minus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || |||||||| || ||||| ||||| ||||| || |||||| |||| || ||| Sbjct 4215999 GCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGACCTGCTTTCCACGAATAAAAA 4215940 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 || || ||||| ||| |||| | || || |||| |||||||| | || |||||| Sbjct 4215939 TGGATTGATGTTAATTTTCCATAATTAGGTTCAGCTACGTGAATATTGAAAGACTGACTT 4215880 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTT--TTGAGGAATTT 68572 ||||| || || |||||||| || ||||||||||||||| | || |||| ||| | Sbjct 4215879 TGATCAATAAAGGCTCCTCTGTCAGCCGCCATTTTTATAGTTGATTTAATTGA--AATCT 4215822 Query 68573 CCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA--GGCTCG-TATTTTGAATGG 68629 |||| | || ||| | | | || || | |||| | || ||||||| || | Sbjct 4215821 CCCACACTGTTTTATACAAATCACGAATTTCCTTCGGAATTGATTCAATATTTTGTATTG 4215762 Query 68630 ATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTA 68689 | |||| || ||||| ||| ||| || ||||| |||| |||||| | || |||| Sbjct 4215761 AACCACGATTTGATATTATTTGATTTTTCATCTCGTCATCCCACAAATCAAGTTCGGTTA 4215702 Query 68690 AAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGT 68749 || | | || | || | || |||| ||||||||| || || || |||| | |||| Sbjct 4215701 AATCACGGAGTAAGTGATGGTTTACTACTTGAAATTCGCCGGACAATACTCGTCTTGTGT 4215642 Query 68750 AAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATG 68809 |||| || ||||| || || | || ||||| || |||| ||||| ||||| |||| Sbjct 4215641 AAATGTTTGAAGTATAAGGCTCGAACGACTCATTGTTGCCCATTATTTGTGCAGTAGATG 4215582 Query 68810 CAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGT---GTTAT-GATTTTA 68865 | || ||||| || || || | |||| |||||| | ||||||| | ||| |||||| Sbjct 4215581 CTGTAGGCATGGGAGCAACGAGTAAAGAATTTCTGACACCATGTTGCGCTATCGATTTT- 4215523 Query 68866 TCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGT 68925 || ||| | ||| ||||||||||| | ||| |||||| | ||| || || Sbjct 4215522 ---TTAAGAACATCCCAGTCCCAAAGATCTGTTGGCGATTTATTCCACATATCATACTGC 4215466 Query 68926 AGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCT 68985 | |||||| || ||| | |||| ||| || ||||| ||||| || || |||| Sbjct 4215465 AAAATTCCTTTGCTTACTGGACTTCCAACATAAGTCTCATATGGTCCATCTCTTTGAGCT 4215406 Query 68986 AGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGA 69045 | |||||| || || || | || || || || || ||||||||||||| || ||| | | Sbjct 4215405 AATTCACAGCTGGCTTCCAGAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAAA 4215346 Query 69046 TCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCC 69105 ||| || |||| ||| | | ||| | | | || || || || || || || Sbjct 4215345 AGAAATGCATCATGACTTTCGTAAGAATACCGCATTAATATTAACGCGTCCGCAAACCCT 4215286 Query 69106 TGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGA 69165 || || ||||| || ||||| | || | |||||| ||| ||||||||| | ||| Sbjct 4215285 TGGACTCCAATTCCAATAGGACGGTGGCGTAAATTTGATTTTTTAGCTTCTGGCAAAGGG 4215226 Query 69166 TAATAATTAATATCTATAATTTT-ATTAAG-ATTTCGGACTACTACTTTAACCACGTCCT 69223 || ||||| ||||| || ||||| ||||| ||||| | || | |||| || || | Sbjct 4215225 TAGTAATTTATATCAATTATTTTGTTTAAGTTTTTCGTA--ACAATTTTAGTTACTTCTT 4215168 Query 69224 TTAGTTTGAGAAAATCA---AATCGTCCATCTATAACAAACATATTCAGTGCTACAGATG 69280 | || || ||| ||| || | ||| | ||||||||||| ||||| | || | Sbjct 4215167 TAAGCTTTTTAAAGTCATACGATTTTTCATGCGTCACAAACATATTAAGTGCAATTGACG 4215108 Query 69281 CTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGAT 69340 | | |||||| || |||| |||| | || ||| | | ||| ||||| || |||| Sbjct 4215107 CCAAATTACACACAGCTATTTCATCTGGTGCTGAATACTCAACTATTTCTGTGCACAGAT 4215048 Query 69341 TACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGT 69400 |||| ||||| ||||| || | |||||| || || || ||| ||||||| | ||||| Sbjct 4215047 TACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACACGAATCCTTAA 4214988 Query 69401 AAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCC 69460 | | || | || ||||| || || | |||||||||||||| | ||||| || Sbjct 4214987 ATAACATGTAGGGTGTACCCGTCTCTACTTGAGATTCGATAATGGCAAACCAAA-GAGAT 4214929 Query 69461 T-AGCATTTATTACGGTCTTGTAACGCTTC--TCTTTTTCATATTGTGTATATAGCCGTT 69517 | ||| || || || || | | | || |||| |||||||| |||| || || Sbjct 4214928 TGAGCCTTAATAAC--TCGATTCGCTCGTCCTTCTTGTTCATATTTGATATAAAGGTTTT 4214871 Query 69518 CGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACC 69577 | || || || ||||||||||| | |||||||||| || ||||||||| | ||||| Sbjct 4214870 CAAAATCTTCACCCCAAACATCTGGAAGGCCAGGACATTTATGTGGACACATTAGTGACC 4214811 Query 69578 ACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGA 69637 | | |||| | | ||| ||||||||||| ||||| |||||||| | || | ||| | Sbjct 4214810 AATCTTCATTGGCTTCAACACGTTTCATAAAAAGATCAGGAATCCACAATGCAAAAAACA 4214751 Query 69638 GATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAA 69697 |||| | | | || ||| || ||||| |||||||||||||| || | ||| || | | Sbjct 4214750 GATCGCGCGCCCGATGTTCCTCCTTTCCAGTATTTTTTTTAAGGTCCAAAAATTCGAAGA 4214691 Query 69698 TATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCT 69757 ||| || ||||| || |||| || || || | |||| |||| |||| || |||| Sbjct 4214690 CATCTGAGTGCCAAGGCTCTAAGTAAATAGCAAATGCTCCAGGTCTTTTACCACCGCCCT 4214631 Query 69758 GATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGG-AATAATACCATTAGAT 69816 |||| | || | || |||||| | ||||| | ||| || | |||| ||||| || Sbjct 4214630 GATCGACATAACGTGCCACATTATTAAAAACTCTTAACATTGGTACTAAT-CCATTTGAA 4214572 Query 69817 TTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCT 69876 |||| || |||||| |||| | ||||| | || |||||| || | || || Sbjct 4214571 GTACCGTTCGTTCCACAAATTGATGTTCCTTTAGCTCGAATACAGTGAACATTCAGTCCA 4214512 Query 69877 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCT 69936 || || |||||| || || || | || || | | | || | | | || || || Sbjct 4214511 ATGCCACCTGCCGACTTTGAAATCATTGCGCATTGCTCAACTGATTTAAAAATCCCTTCA 4214452 Query 69937 ATGCTATCATCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCC 69995 || |||| | || |||||| ||||| || ||||| ||| || | | || | Sbjct 4214451 ATTGAATCAGACACTATAGTTAAG-AGAAAGCATGAAGACAATTGTGGACGGTTTGTGGC 4214393 Query 69996 CGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGT 70055 ||| ||| | || || ||||| ||||| || | ||||| |||| |||||| || Sbjct 4214392 TGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCAGATAGCAAATTGTAGGT 4214333 Query 70056 TTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATG 70115 ||| | || || || ||||| ||| || ||||| || |||||||| | || ||| Sbjct 4214332 TTCCACTGCAGAATCAATATCTTCGCCATGTATACCTATAGCAACACGCATTAGCAAATG 4214273 Query 70116 CTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTT 70175 ||| |||| |||| | |||| ||||||||| | || ||| || || || || || Sbjct 4214272 CTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAGTAAGACCGCTCAAGTGTCTT 4214213 Query 70176 AAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATC 70235 ||| ||||| ||||| ||| ||| || | || || |||||| |||| || | ||| Sbjct 4214212 AAATCCAAAGTAGTTATATCCAAAATCACGATCATATATAATAGCAGAGTTCAAGCGATC 4214153 Query 70236 CTTATATTTGGTAACTATAT 70255 | || || ||||||||| Sbjct 4214152 CGAATTATTTTTAACTATAT 4214133 >seq4 Length=22154029 Score = 241 bits (266), Expect = 2e-58 Identities = 503/745 (68%), Gaps = 7/745 (1%) Strand=Plus/Plus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370 ||| |||| ||||| ||| ||||| ||||| ||||||||||| ||||||||||| Sbjct 3240309 GACGTAACGCCCATACGTTGATATTCTCCAACTTTCTTCTCGAAAAAGTTAGTTTTGCCA 3240368 Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAAT 39430 |||| || || | |||||||| || ||||| | | ||| || |||| || Sbjct 3240369 TCCAGCGAGATCATCTCCATGAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACA 3240428 Query 39431 CCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAA 39490 || | ||| | || | ||| || |||||||| || ||| ||||| | ||||| Sbjct 3240429 CCGAGTTCCACCAGCAGACGATCCGCCACAAATTCAATATATTGGGACATCAATGCACAA 3240488 Query 39491 TTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACG 39550 ||||| || || | || || || ||||| || || |||||||||| || ||| || Sbjct 3240489 TTCATGCCAATCAAATTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACA 3240548 Query 39551 GCCTC--TGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAA 39608 || || | || | |||||| ||| ||| || || | |||| ||||| | Sbjct 3240549 GCATCCGAGATAATCTCGATGATAC--GCTCCCGGCTGGGCCGTTGCACCAAATGCCGGA 3240606 Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 |||| | | || ||||||||||| | |||||| || | || || || || || | Sbjct 3240607 ACATCATGACAGCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGA 3240666 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAG 39728 | || || || ||||| ||||||||||| || |||||||| || | ||||| ||| Sbjct 3240667 ACGTCAGACCTGGCATCAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCGC 3240726 Query 39729 AAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCAT 39788 |||||||| || || || || ||||| || | || |||||| || | | | | | Sbjct 3240727 TGAAGAAGATTCCCTCCACGGCAGCAAACGCGATAATTCTCTCGCCAAAGTTCGCCGCCT 3240786 Query 39789 T--ATG-TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTA 39845 | ||| ||||| | ||||||||||| || ||| ||| ||||||||||| | Sbjct 3240787 TCGATGAAATCCAAGAGAGCGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCAA 3240846 Query 39846 TAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGAC 39905 | ||||| || ||||||| ||| | ||| ||| ||||||||| || | || | Sbjct 3240847 TGGCATTGAACAGATAATCCCTTTGCTGTGGATCCCTAATATATGTATCGATCAGCACGC 3240906 Query 39906 TATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTT 39965 | ||||| || || || | || || || || || ||||| || || ||||| | |||| Sbjct 3240907 TGTACATCTCCGAGTGCACATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGCTT 3240966 Query 39966 CAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCAC 40025 | || ||||| ||||| | || | || ||| ||| ||||| || || ||||| Sbjct 3240967 CGGTTATTTGCACCTCCTGGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCGG 3241026 Query 40026 TAGCGGCAAAAAATGCCAATACATG 40050 |||||||| || || | ||||| Sbjct 3241027 AGGCGGCAAAGAAGGCGAGCACATG 3241051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686839654042920