Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq4 201 9e-47
seq6 172 4e-38
seq1 131 1e-25
>seq4
Length=22154029
Score = 201 bits (222), Expect = 9e-47
Identities = 485/732 (66%), Gaps = 8/732 (1%)
Strand=Plus/Minus
Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915
|| || ||||| || ||| || || || ||||| ||| |||| || || ||
Sbjct 3241042 GCCTTCTTTGCCGCCTCCGATGGCATTGTTAATGAGAATCTGGTCGAGCGCTTCAGCCAG 3240983
Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975
|| || ||| || | ||||| || ||||| ||||| |||||||||||||| || ||| |
Sbjct 3240982 GAGGTGCAAATAACCGAAGCTCGTTGTTTCTATGGCTTTCAAATTGCCATGGAGAATGTG 3240923
Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035
|| ||||| |||||||| | ||||| ||||| || || | ||| || | | | ||
Sbjct 3240922 CACTCGGAGATGTACAGCGTGCTGATCGATACATATATTAGGGATCCACAGCAAAGGGAT 3240863
Query 44036 CGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTT 44095
|||| ||||| || |||||| | || || | || | || || || ||||| ||
Sbjct 3240862 TATCTGTTCAATGCCATTGAAACAATGCCCGCTGTCAAGCGAAAGGCTGATTGGGCGCTC 3240803
Query 44096 AAATGGATAAATTCAAATGATTC---TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTG 44152
||||| || || | | ||||| || || || |||||||||| | |||
Sbjct 3240802 TCTTGGATTTCATCGAAGGCGGCGAACTTTGGCGAGAGAATTATCGCGTTTGCTGCCGTG 3240743
Query 44153 GAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTG 44212
|| || || ||||| ||| ||||| | || |||||| | ||||| || ||| ||
Sbjct 3240742 GAGGGAATCTTCTTCAGCGGAAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTG 3240683
Query 44213 ATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGAT 44272
||||| || ||||||| || |||||||| || || || || ||||| ||||| ||
Sbjct 3240682 ATGCCAGGTCTGACGTTCTCCAATGAGTTGATCTCACGCGACGAGGGCTTGCATTGTGAC 3240623
Query 44273 TTTGCTTGCTTGTTACTTGGATATCTAG-GAGACGATAAGCCTTCATGTAAGACAATTAC 44331
|||||| | || | | | || | | | ||| ||| | || || |
Sbjct 3240622 TTTGCTGTCATGATGTTCCGGCATTTGGTGCAACG----GCCCAGCCGGGAGCGTATCAT 3240567
Query 44332 AGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGT 44391
|| ||| | || || || | || || ||||| ||| | ||| || | || ||
Sbjct 3240566 CGAGATTATCTCGGATGCTGTTACCATTGAGCAAGAGTTTCTCACAGATGCTCTGCCCGT 3240507
Query 44392 AAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCG 44451
||||| || || |||||| |||||| |||||||||||||| | || |||||
Sbjct 3240506 CAATTTGATTGGCATGAATTGTGCATTGATGTCCCAATATATTGAATTTGTGGCGGATCG 3240447
Query 44452 TTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTAT 44511
| | || ||||||| ||| | ||| ||| | | | || || || || ||
Sbjct 3240446 TCTGCTGGTGGAACTCGGTGTTGGCAAAATCTACAATACGAAGAATCCATTCACCTTCAT 3240387
Query 44512 GGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571
||| | || ||| |||| |||||||| |||||||| || || ||||||||||||||
Sbjct 3240386 GGAGATGATCTCGCTGGATGGCAAAACTAACTTTTTCGAGAAGAAAGTTGGAGAATATCA 3240327
Query 44572 GCGAATGGGCGT 44583
|| ||||||||
Sbjct 3240326 ACGTATGGGCGT 3240315
>seq6
Length=21059900
Score = 172 bits (190), Expect = 4e-38
Identities = 441/667 (66%), Gaps = 16/667 (2%)
Strand=Plus/Plus
Query 19273 ATCTTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGA 19332
||||||||| | || |||| |||||||| ||| | | || | | | || ||||
Sbjct 6998122 ATCTTTCGTCGTGCGTTTGCCTCGCGTGTCTTTCCACCCGAACTGGTCGAGCAGCTGGGC 6998181
Query 19333 TGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATT 19392
|| || ||||| || | ||||| ||||| ||||| ||| || ||||| | ||
Sbjct 6998182 TGCAAGCATGTAAAAGGCATCTTGCTCTATGGCCCACCTGGTACGGGCAAAACCCTGATG 6998241
Query 19393 GCGAGAGAACTTAGTAAATTACTTACAAAACAACCT----CCCAAAATTGTAAATGGTCC 19448
|| | || || | | | || | || || || || || || ||||| ||
Sbjct 6998242 GCTCGTCAAATTGGAACCATGCTGA----ACGCCCGTGAGCCGAAGATCGTGAATGGACC 6998297
Query 19449 TGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGA 19508
| || || |||||||||| || ||||||||| ||||| |||||| |||| || ||
Sbjct 6998298 GCAGATATTGGATAAATATGTGGGCGAATCGGAAGCGAATGTGCGACGTCTGTTCGCCGA 6998357
Query 19509 CGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGA 19568
|| ||||| ||| | || ||| | || | || ||| |||| ||||| || | ||
Sbjct 6998358 GGCCGAAGAGGAAGAGAAGCGTCTGGGTCCGAATAGTGGACTGCATATTATCATCTTCGA 6998417
Query 19569 TGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGG---TGTAAAT---GGAGTACATGA 19622
||| | || || || || ||||| | || |||| || ||| || || || ||
Sbjct 6998418 TGAGATCGATGCCATTTGCAAGCAGCGTGGCTCTGTGGCTGGCAATAGTGGTGTCCACGA 6998477
Query 19623 CACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTT 19682
||| || |||||||| || ||| | ||| | || ||||| | || |||| ||||| ||
Sbjct 6998478 CACCGTCGTCAATCAGCTGCTGACCAAAATCGATGGTGTGGATCAGTTGAACAATATCTT 6998537
Query 19683 AGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCG 19742
|| || |||||||| ||| ||| ||| | || || || | | || || |||||
Sbjct 6998538 GGTCATCGGCATGACCAATCGACGGGACATGATCGATGAGGCGCTGCTGCGTCCTGGTCG 6998597
Query 19743 GTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAA 19802
|||||| | | || || || | || ||| | ||| ||||| || | || || ||
Sbjct 6998598 CTTGGAAGTCCAAATGGAGATCAGTTTGCCCAACGAAGAGGGACGCGTCCAGATCTTGAA 6998657
Query 19803 CATACATACATCAACCATGCGACAAAATAACCTTTTAAATGACGATGTAGA-TCTAGAAG 19861
||||||||| | ||||| | ||| | | ||||||||| || | || |
Sbjct 6998658 CATACATACGAAACGTATGCGGGACTTCAACAAGATCAGTGACGATGTCGACTGCAG-GG 6998716
Query 19862 AAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGGATTAGTGAGGGCCG 19921
| || |||||| ||||| |||| |||||| ||||| |||||||| | ||| | || |
Sbjct 6998717 AGATCGCAGCGCTCACCAAGAACTTTAGCGGTGCAGAGCTTGAGGGTCTTGTGCGAGCAG 6998776
Query 19922 CCCAATC 19928
| |||||
Sbjct 6998777 CACAATC 6998783
>seq1
Length=24697304
Score = 131 bits (144), Expect = 1e-25
Identities = 264/389 (68%), Gaps = 6/389 (2%)
Strand=Plus/Plus
Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488
||||| ||||| ||||| || | || | | |||||||| ||| | ||||||| ||
Sbjct 5490337 CCCAAGATTGTGAATGGGCCACAGATTCTGGACAAATATGTGGGTGAGTCGGAAGCCAAC 5490396
Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548
| ||||| ||||||| ||||| || || || | || || |||| | || |||
Sbjct 5490397 ATTCGACGCCTGTTTGCCGACGCCGAGGAGGAGGAGAAGCGCCTAGGACCGAACAGTGGG 5490456
Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGGT- 19605
| ||||| || || | |||||| | || || ||||| ||| | | || || |||
Sbjct 5490457 CTACACATAATCATCTTCGATGAAATCGATGCCATCTGCAAGGCACGTGGCTCGGTGGCC 5490516
Query 19606 -GTAAA--TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662
|||| ||| |||||||| || || |||||||| || ||| | || | ||||| ||
Sbjct 5490517 GGTAACAGTGGCGTACATGATACCGTGGTCAATCAGCTGCTGGCTAAGATTGACGGCGTG 5490576
Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722
| || ||||| ||||| || || ||||||||||| ||| | | ||| | || ||
Sbjct 5490577 GAGCAGCTGAACAATATATTGGTCATTGGCATGACCAATCGCCGGGATATGATTGATGAG 5490636
Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782
|| || | |||||||| || |||| | | || ||||| | | | ||| | |||
Sbjct 5490637 GCGCTACTTCGACCCGGCCGCCTGGAGGTGCAAATGGAAATCAGCCTGCCCAACGAAGAG 5490696
Query 19783 GGACGTGTGGAAATTTTAAACATACATAC 19811
||||| || | || | |||||||| ||
Sbjct 5490697 GGACGCGTTCAGATCCTCAACATACACAC 5490725
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397416991308265
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |