Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq4 201 9e-47 seq6 172 4e-38 seq1 131 1e-25 >seq4 Length=22154029 Score = 201 bits (222), Expect = 9e-47 Identities = 485/732 (66%), Gaps = 8/732 (1%) Strand=Plus/Minus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || || ||||| || ||| || || || ||||| ||| |||| || || || Sbjct 3241042 GCCTTCTTTGCCGCCTCCGATGGCATTGTTAATGAGAATCTGGTCGAGCGCTTCAGCCAG 3240983 Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 || || ||| || | ||||| || ||||| ||||| |||||||||||||| || ||| | Sbjct 3240982 GAGGTGCAAATAACCGAAGCTCGTTGTTTCTATGGCTTTCAAATTGCCATGGAGAATGTG 3240923 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 || ||||| |||||||| | ||||| ||||| || || | ||| || | | | || Sbjct 3240922 CACTCGGAGATGTACAGCGTGCTGATCGATACATATATTAGGGATCCACAGCAAAGGGAT 3240863 Query 44036 CGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTT 44095 |||| ||||| || |||||| | || || | || | || || || ||||| || Sbjct 3240862 TATCTGTTCAATGCCATTGAAACAATGCCCGCTGTCAAGCGAAAGGCTGATTGGGCGCTC 3240803 Query 44096 AAATGGATAAATTCAAATGATTC---TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTG 44152 ||||| || || | | ||||| || || || |||||||||| | ||| Sbjct 3240802 TCTTGGATTTCATCGAAGGCGGCGAACTTTGGCGAGAGAATTATCGCGTTTGCTGCCGTG 3240743 Query 44153 GAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTG 44212 || || || ||||| ||| ||||| | || |||||| | ||||| || ||| || Sbjct 3240742 GAGGGAATCTTCTTCAGCGGAAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTG 3240683 Query 44213 ATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGAT 44272 ||||| || ||||||| || |||||||| || || || || ||||| ||||| || Sbjct 3240682 ATGCCAGGTCTGACGTTCTCCAATGAGTTGATCTCACGCGACGAGGGCTTGCATTGTGAC 3240623 Query 44273 TTTGCTTGCTTGTTACTTGGATATCTAG-GAGACGATAAGCCTTCATGTAAGACAATTAC 44331 |||||| | || | | | || | | | ||| ||| | || || | Sbjct 3240622 TTTGCTGTCATGATGTTCCGGCATTTGGTGCAACG----GCCCAGCCGGGAGCGTATCAT 3240567 Query 44332 AGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGT 44391 || ||| | || || || | || || ||||| ||| | ||| || | || || Sbjct 3240566 CGAGATTATCTCGGATGCTGTTACCATTGAGCAAGAGTTTCTCACAGATGCTCTGCCCGT 3240507 Query 44392 AAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCG 44451 ||||| || || |||||| |||||| |||||||||||||| | || ||||| Sbjct 3240506 CAATTTGATTGGCATGAATTGTGCATTGATGTCCCAATATATTGAATTTGTGGCGGATCG 3240447 Query 44452 TTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTAT 44511 | | || ||||||| ||| | ||| ||| | | | || || || || || Sbjct 3240446 TCTGCTGGTGGAACTCGGTGTTGGCAAAATCTACAATACGAAGAATCCATTCACCTTCAT 3240387 Query 44512 GGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 ||| | || ||| |||| |||||||| |||||||| || || |||||||||||||| Sbjct 3240386 GGAGATGATCTCGCTGGATGGCAAAACTAACTTTTTCGAGAAGAAAGTTGGAGAATATCA 3240327 Query 44572 GCGAATGGGCGT 44583 || |||||||| Sbjct 3240326 ACGTATGGGCGT 3240315 >seq6 Length=21059900 Score = 172 bits (190), Expect = 4e-38 Identities = 441/667 (66%), Gaps = 16/667 (2%) Strand=Plus/Plus Query 19273 ATCTTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGA 19332 ||||||||| | || |||| |||||||| ||| | | || | | | || |||| Sbjct 6998122 ATCTTTCGTCGTGCGTTTGCCTCGCGTGTCTTTCCACCCGAACTGGTCGAGCAGCTGGGC 6998181 Query 19333 TGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATT 19392 || || ||||| || | ||||| ||||| ||||| ||| || ||||| | || Sbjct 6998182 TGCAAGCATGTAAAAGGCATCTTGCTCTATGGCCCACCTGGTACGGGCAAAACCCTGATG 6998241 Query 19393 GCGAGAGAACTTAGTAAATTACTTACAAAACAACCT----CCCAAAATTGTAAATGGTCC 19448 || | || || | | | || | || || || || || || ||||| || Sbjct 6998242 GCTCGTCAAATTGGAACCATGCTGA----ACGCCCGTGAGCCGAAGATCGTGAATGGACC 6998297 Query 19449 TGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGA 19508 | || || |||||||||| || ||||||||| ||||| |||||| |||| || || Sbjct 6998298 GCAGATATTGGATAAATATGTGGGCGAATCGGAAGCGAATGTGCGACGTCTGTTCGCCGA 6998357 Query 19509 CGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGA 19568 || ||||| ||| | || ||| | || | || ||| |||| ||||| || | || Sbjct 6998358 GGCCGAAGAGGAAGAGAAGCGTCTGGGTCCGAATAGTGGACTGCATATTATCATCTTCGA 6998417 Query 19569 TGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGG---TGTAAAT---GGAGTACATGA 19622 ||| | || || || || ||||| | || |||| || ||| || || || || Sbjct 6998418 TGAGATCGATGCCATTTGCAAGCAGCGTGGCTCTGTGGCTGGCAATAGTGGTGTCCACGA 6998477 Query 19623 CACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTT 19682 ||| || |||||||| || ||| | ||| | || ||||| | || |||| ||||| || Sbjct 6998478 CACCGTCGTCAATCAGCTGCTGACCAAAATCGATGGTGTGGATCAGTTGAACAATATCTT 6998537 Query 19683 AGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCG 19742 || || |||||||| ||| ||| ||| | || || || | | || || ||||| Sbjct 6998538 GGTCATCGGCATGACCAATCGACGGGACATGATCGATGAGGCGCTGCTGCGTCCTGGTCG 6998597 Query 19743 GTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAA 19802 |||||| | | || || || | || ||| | ||| ||||| || | || || || Sbjct 6998598 CTTGGAAGTCCAAATGGAGATCAGTTTGCCCAACGAAGAGGGACGCGTCCAGATCTTGAA 6998657 Query 19803 CATACATACATCAACCATGCGACAAAATAACCTTTTAAATGACGATGTAGA-TCTAGAAG 19861 ||||||||| | ||||| | ||| | | ||||||||| || | || | Sbjct 6998658 CATACATACGAAACGTATGCGGGACTTCAACAAGATCAGTGACGATGTCGACTGCAG-GG 6998716 Query 19862 AAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGGATTAGTGAGGGCCG 19921 | || |||||| ||||| |||| |||||| ||||| |||||||| | ||| | || | Sbjct 6998717 AGATCGCAGCGCTCACCAAGAACTTTAGCGGTGCAGAGCTTGAGGGTCTTGTGCGAGCAG 6998776 Query 19922 CCCAATC 19928 | ||||| Sbjct 6998777 CACAATC 6998783 >seq1 Length=24697304 Score = 131 bits (144), Expect = 1e-25 Identities = 264/389 (68%), Gaps = 6/389 (2%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| ||||| ||||| || | || | | |||||||| ||| | ||||||| || Sbjct 5490337 CCCAAGATTGTGAATGGGCCACAGATTCTGGACAAATATGTGGGTGAGTCGGAAGCCAAC 5490396 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 | ||||| ||||||| ||||| || || || | || || |||| | || ||| Sbjct 5490397 ATTCGACGCCTGTTTGCCGACGCCGAGGAGGAGGAGAAGCGCCTAGGACCGAACAGTGGG 5490456 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGGT- 19605 | ||||| || || | |||||| | || || ||||| ||| | | || || ||| Sbjct 5490457 CTACACATAATCATCTTCGATGAAATCGATGCCATCTGCAAGGCACGTGGCTCGGTGGCC 5490516 Query 19606 -GTAAA--TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 |||| ||| |||||||| || || |||||||| || ||| | || | ||||| || Sbjct 5490517 GGTAACAGTGGCGTACATGATACCGTGGTCAATCAGCTGCTGGCTAAGATTGACGGCGTG 5490576 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || ||||| ||||| || || ||||||||||| ||| | | ||| | || || Sbjct 5490577 GAGCAGCTGAACAATATATTGGTCATTGGCATGACCAATCGCCGGGATATGATTGATGAG 5490636 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 || || | |||||||| || |||| | | || ||||| | | | ||| | ||| Sbjct 5490637 GCGCTACTTCGACCCGGCCGCCTGGAGGTGCAAATGGAAATCAGCCTGCCCAACGAAGAG 5490696 Query 19783 GGACGTGTGGAAATTTTAAACATACATAC 19811 ||||| || | || | |||||||| || Sbjct 5490697 GGACGCGTTCAGATCCTCAACATACACAC 5490725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397416991308265