Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 2e-12 seq4 82.4 9e-11 >seq2 Length=4222574 Score = 87.8 bits (96), Expect = 2e-12 Identities = 185/270 (69%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 179037 TGTGAAGATGTACCT--CGTTTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCAAAT 179094 |||||||||||| | || ||| || |||||| ||||| | | ||| || || || Sbjct 3935356 TGTGAAGATGTAACGAGCGCTTGC-ACA-ATCTTTACCACCGGTTAAACGTGTGCCGAAC 3935413 Query 179095 TGACCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTG 179154 ||||| | || || || | ||| |||||||| || || | | | | ||||| || Sbjct 3935414 TGACCGCGAGGTTCTAGCAAATTTATATTGTTCGATCCGACAAAATTCTGTGCCAAATTT 3935473 Query 179155 ACAATCGT-ATCCGCGAGGGAGACTTCACCGTGATGGTAAGCCGACTTGTCCGCCACATA 179213 || || || ||| || ||||| | || ||||||||||| || ||| | |||||||| | Sbjct 3935474 ACTATAGTCATCTGC-AGGGACATCTCGCCGTGATGGTATGCTGACATTTCCGCCACCGA 3935532 Query 179214 TGCCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACAT 179273 | | | ||| ||||| || | ||| |||| ||| | |||||| | | |||| Sbjct 3935533 GCCGGATAGCTGAGCCACTTTTACCTCCCTCTTGTCGTTACGCTTGAAGCAAGTAAACAT 3935592 Query 179274 CACCTTTCTTTGTGAAGGCTTGAGGCCGTC 179303 |||||| | || |||||| ||||| || Sbjct 3935593 CACCTTACGCTGACCAGGCTTTAGGCCATC 3935622 >seq4 Length=22154029 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 |||||||| || ||||| | ||||| ||||| |||||||||||| ||||| |||||| Sbjct 3240636 CCCTCGTCGCGTGAGATCAACTCATTGGAGAACGTCAGACCTGGCATCAGACCACGCTTC 3240695 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 |||| ||| || |||| ||| || ||||||||| |||||||| Sbjct 3240696 TTCAGCCAAAAGATCGAGGCAAAGCTTCCGCTGAAGAAGATTCCCTCCAC 3240745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618372946766680