Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 138 1e-27 seq4 86.0 7e-12 >seq2 Length=4222574 Score = 138 bits (152), Expect = 1e-27 Identities = 372/561 (66%), Gaps = 11/561 (2%) Strand=Plus/Plus Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 104755 |||||||| || | || | |||||||| ||||| || ||||| | ||||| | | | Sbjct 4214744 CGCGATCTGTTTTTTGCATTGTGGATTCCTGATCTTTTTATGAAACGTGTTGAAGCCAAT 4214803 Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAG 104815 | ||||||| || | |||||| | || ||||| || | |||| |||||| Sbjct 4214804 GAAGATTGGTCACTAATGTGTCCACATAAATGTCCTGGCCTTCCAGATGTTTGGGGTGAA 4214863 Query 104816 GAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCA 104875 || |||||| |||||| | || || || ||||||| || |||| | ||| | | | Sbjct 4214864 GATTTTGAAAACCTTTATATCAAATATGAACAAGAAGGACGAGCGAAT-CGA-GTTATTA 4214921 Query 104876 --GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACA 104933 ||| | | ||| || ||| || | |||||| ||||| |||||||| |||| Sbjct 4214922 AGGCTCAATCTCTTTGGTTTGCCATTATCGAATCTCAAGTAGAGACGGGTACACCCTACA 4214981 Query 104934 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 104993 || | | || || | |||||| ||| || || ||| | ||| | || || || Sbjct 4214982 TGTTATTTAAGGATTCGTGTAACAGAAAAAGCAACCAACAAAATGTTGGAACTATAAAAT 4215041 Query 104994 GTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 105053 | ||||| || |||||||| | || | | ||| |||||| | |||||||||| Sbjct 4215042 GCAGTAATCTGTGCACAGAAATAGTTGAGTATTCAGCACCAGATGAAATAGCTGTGTGTA 4215101 Query 105054 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATG 105113 | | || ||||| || || | || |||| | || ||| | | ||| | | Sbjct 4215102 ATTTGGCGTCAATTGCACTTAATATGTTTGTGACGCATGA---AAAATCGTATGACTTTA 4215158 Query 105114 AAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAA 105173 |||| || | ||||| || |||| ||| || |||||| |||||| | | ||||||| || Sbjct 4215159 AAAAGCTTAAAGAAGTAACTAAAATTGTTACGAAAAACTTAAACAAAATAATTGATATAA 4215218 Query 105174 ATTTTTACCCCGTTG--AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCT 105231 ||| || ||| ||| ||| ||| ||||| ||| | | |||||||| ||||| | Sbjct 4215219 ATTACTA-CCCTTTGCCAGA-AGCTAAAAAATCAAATTTACGCCACCGTCCTATTGGAAT 4215276 Query 105232 CGGTGTTCAGGGTCTCGCGGA 105252 || || || || | ||||| Sbjct 4215277 TGGAGTCCAAGGGTTTGCGGA 4215297 >seq4 Length=22154029 Score = 86.0 bits (94), Expect = 7e-12 Identities = 324/501 (65%), Gaps = 8/501 (2%) Strand=Plus/Minus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGAA 94500 ||||||| || ||||| |||||||| |||||||||| || ||| | ||| ||| Sbjct 3241132 TGGACTGTGGAGGAGGTGGATCTCTCCAAGGATTTGGCGGACTGGGCACGTTTAACTGAT 3241073 Query 94501 AATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGTT 94560 || || | || || | | || || |||||||| | |||||||| |||||| Sbjct 3241072 AACGAGCGTCACTTTATCTCGCATGTGCTCGCCTTCTTTGCCGCCTCCGATGGCATTGTT 3241013 Query 94561 TTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCCTTC 94620 ||||||| | | ||| | ||||||||| | ||||| | | ||| Sbjct 3241012 AATGAGAATCTGGTCGAGCGCTTCAGCCAGGAGGTGCAAATAACCGAAGCTCGTTGTTTC 3240953 Query 94621 TATGCGTATCAG--TGTCATAATGAAATGGTGCATGGGGAGACATACAGTAAACTCATAG 94678 |||| | ||| || ||| ||| ||||| ||||| ||||| || || | Sbjct 3240952 TATGGCTTTCAAATTGCCATGGAGAAT--GTGCACTCGGAGATGTACAGCGTGCTGATCG 3240895 Query 94679 ACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTC 94738 | | ||||||| |||| | | | | | || || | ||||| ||||| | | Sbjct 3240894 ATACATATATTAGGGATCCACAGCAAAGGGATTATCTGTTCAATGCCATTGAAACAATGC 3240835 Query 94739 CGTGTATTCAAAAGAAAG-CGGATTGGGCTATGAAGTGG-TTTGATACAAAGTCGCGTTC 94796 | | | ||| ||||| | |||||||| | ||| ||| || || | ||| | Sbjct 3240834 CCGCTGT-CAAGCGAAAGGCTGATTGGGCGCTCTCTTGGATTTCATCGAAGGCGGCGAAC 3240776 Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 || || ||| || | |||| ||||| || ||||| ||||||||| || ||| Sbjct 3240775 TTTGGC-GAGAGAATTATCGCGTTTGCTGCCGTGGAGGGAATCTTCTTCAGCGGAAGCTT 3240717 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 | | || | |||||| |||||||| ||||| ||||||||||| |||||||| || Sbjct 3240716 TGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTGATGCCAGGTCTGACGTTCTCCAATGA 3240657 Query 94917 GCTTATCTCTCGTGACGAGGG 94937 | | ||||| || |||||||| Sbjct 3240656 GTTGATCTCACGCGACGAGGG 3240636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583202087509720