Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1 316 6e-81 seq3 179 1e-39 seq6 98.7 3e-15 >seq1 Length=24697304 Score = 316 bits (350), Expect = 6e-81 Identities = 966/1477 (65%), Gaps = 31/1477 (2%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||| | || || ||||| || || || || ||||| || | ||| | || ||| Sbjct 8901639 GCTGTTGGTATTGATTTGGGCACAACCTACTCTTGCGTGGGTGTGTTCCAGCATGGCAAG 8901580 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || || ||||| || ||||| ||||| | || || ||||| || ||||| || || Sbjct 8901579 GTTGAGATCATTGCCAACGATCAGGGTAATCGTACCACCCCATCTTATGTTGCCTTCACG 8901520 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || |||||| |||||||||| | || || || || | || || |||| | Sbjct 8901519 GAGACGGAGCGTTTGATTGGTGACGCCGCCAAGAACCAGGTGGCCATGAACCCAACCCAA 8901460 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || | || ||||||||||| || |||||| | | || ||| | || ||| Sbjct 8901459 ACAATCTTCGATGCTAAGCGTCTGATTGGTCGCAAATTCGATGATGCGGCCGTGCAGTCT 8901400 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 ||| | || || | ||||| || || || | | || || || | || ||| Sbjct 8901399 GATATGAAGCACTGGCCTTTCGAGGTCGTG---AACGTTGATGGCAAGCCCAAGATCGAG 8901343 Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTT-TTACCCGAAGAAATTTCATCAATGGTTTT 349557 ||| || || | ||| || || | ||| || ||||| || || || || ||||| || Sbjct 8901342 GTTACGTACAAGGATGAG-AAGAAGACTTTCTTCCCCGAGGAGATCTCCTCCATGGTGTT 8901284 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 || |||||||| | || || || || | || | || || || |||| || || Sbjct 8901283 GACCAAGATGAAGGAGACCGCCGAGGCGTACCTGGGCAAGACGGTTACCAATGCCGTCAT 8901224 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 ||||| || |||||||| || ||| | |||||| ||||| || |||||||||| ||| Sbjct 8901223 CACTGTGCCCGCCTATTTCAACGATTCACAGCGTCAGGCAACCAAGGATGCTGGCACCAT 8901164 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 || || || || || | | || || ||||| || ||||| || || || || ||||| Sbjct 8901163 CGCCGGTTTGAACGTATTGCGTATTATCAATGAGCCAACTGCCGCGGCCATCGCCTATGG 8901104 Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 || || || | | || || ||| | | ||||| ||||| || |||||||| Sbjct 8901103 CCTGGACAAGAAGGCTGTTGGCGAGCGTAATGTGTTGATTTTCGATTTGGGCGGTGGTAC 8901044 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 ||||||||| || | || | |||| || || || || || || ||| | |||||||| Sbjct 8901043 TTTTGATGTCTCCATTCTTTCGATTGATGACGGCATCTTCGAGGTCAAATCTACTGCTGG 8900984 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917 ||| || ||| | ||||| || ||||| || |||||||| || | || ||||| | || Sbjct 8900983 TGACACCCATTTGGGTGGTGAGGATTTCGACAATCGTCTAGTCACTCACTTTGTGCAGGA 8900924 Query 349918 ATTTAAGCGTCAAGCTAAAATTGATATTGGA-----GATAATCCTAGAGCAATGCGTCGC 349972 || ||||| ||||| | || | || || | || | | || ||||||| Sbjct 8900923 GTTCAAGCG-CAAGC-ACAAGAAAGATCTGACCACCAACAAGC---GTGCTCTGCGTCGT 8900869 Query 349973 CTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATT 350032 || | ||||| ||||| ||||| |||||| | | || || ||||||| | ||| Sbjct 8900868 CTGCGCACTGCCTGTGAGCGTGCAAAGCGTACTCTTTCCTCATCTACCCAGGCGAGCATT 8900809 Query 350033 GAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTT 350092 || || ||||| || || || | ||||||| | || || || |||||||| || Sbjct 8900808 GAGATCGATTCGCTGTTCGAGGGTACCGATTTCTACACCTCGATCACGCGTGCTCGTTTC 8900749 Query 350093 GAAGAATTATGTATG--GATCTTTTTAG-AGCAACAATGGATCCTGTGGAAAAAGTATTA 350149 || || || | | ||||| || | ||| || ||||| |||||||| || | ||| Sbjct 8900748 GAGGA--GCTGAACGCTGATCTGTTCCGCAGC-ACCATGGACCCTGTGGAGAAGGCATTG 8900692 Query 350150 AAAGATGCAAAAATGTCCAAAAATCAG--ATTGATGAAGTAGTTTTAGTTGGTGGTTCTA 350207 ||||| || || | || || | ||| | || | || || || ||||| || | Sbjct 8900691 CGTGATGCTAAGTTG--GACAAGTCGGCCATTCACGATATTGTGTTGGTCGGTGGCTCCA 8900634 Query 350208 CACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTA 350267 | ||||| || || || || | || | || | || || ||||| || | | Sbjct 8900633 CCCGTATCCCCAAGGTGCAGCGCCTATTGCAGGATCTGTTCAACGGCAAGGAGCTGAACA 8900574 Query 350268 GATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTAT 350327 || || ||||| ||||| |||||||| ||||||||||| || ||||| |||| || Sbjct 8900573 AGTCCATCAATCCCGATGAGGCTGTTGCTTATGGTGCTGCCGTCCAGGCTGCTATCTTGC 8900514 Query 350328 CTGGAAATAAGAGTTCTAA--AATTG-ATGATCTATTACTACTAGATGTAACTCCACTTT 350384 || | ||| || | || || | ||||| || || || ||||| || || || | Sbjct 8900513 ACGGCGACAAG---TCGCAGGAAGTGCAGGATCTGTTGCTGCTCGATGTCACCCCCCTGT 8900457 Query 350385 CGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTG 350444 |||| || | || || |||| | || |||| || | || | || | || Sbjct 8900456 CGCTGGGTATCGAGACCGCTGGCGGCGTGATGAGCGTGTTGATCAAGCGCAACACCACCA 8900397 Query 350445 TACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAA 350504 | || ||||| || |||| || || | || | |||| || ||||| | || | Sbjct 8900396 TCCCCACAAAGCAGACCCAGACCTTCACCACCTACTCAGACAACCAGCCCGGTGTGTTGA 8900337 Query 350505 TTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTA 350564 | || || | |||||||| ||||| || || || |||||| || || |||| Sbjct 8900336 TCCAGGTCTACGAAGGTGAGCGTGCCATGACCAAGGACAATAATCTGCTGGGCAAATTCG 8900277 Query 350565 CCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATA 350624 || | |||||||| || | || ||||| |||||||| || | ||||| | Sbjct 8900276 AGCTGTCGGGCATTCCACCCGCACCACGCGGCGTTCCCCAGATTGAGGTGACCTTCGACA 8900217 Query 350625 TTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGA 350661 ||||| | || |||||| | ||||| ||||| |||| Sbjct 8900216 TTGATGCCAACGGTATTCTGAATGTCACCGCTCTTGA 8900180 Score = 91.5 bits (100), Expect = 4e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || |||||| | || || || || || || || | ||||||||| || || Sbjct 3429455 GCAATTGGTATCGATCTGGGCACCACCTACTCATGCGTGGGTGTTTGGCAGAACAATAAA 3429396 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || || ||||| ||||||||||| || | || ||||| || || || || |||| | Sbjct 3429395 GTTGAGATTATTGCCAATGATCAAGGCAATCGGACGACGCCCTCGTATGTGGCCTTTAAC 3429336 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCA 349356 || || ||||| | ||||| ||| | || |||||||| Sbjct 3429335 GACACAGAGCGCCTAATTGGCGATGCAGCTAAAAATCA 3429298 >seq3 Length=21835025 Score = 179 bits (198), Expect = 1e-39 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | |||||| | ||||||||||||||| || |||||||| ||||| || Sbjct 1955486 CCACCACGCAGACGTAGAACCAAATGAAGAGTAGACTCCTTCTGAATATTGTAATCGGAC 1955427 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 || || || |||||||| ||||| || || || ||||| ||||| |||||||| || ||| Sbjct 1955426 AAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1955367 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || ||||| || |||||||| ||||| || || || ||||| | ||| ||||| || || Sbjct 1955366 ATGCCTTCCTTGTCCTGAATCTTAGCCTTCACGTTCTCAATGGTATCGGATGGCTCCACC 1955307 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || || || || || || || || ||||| Sbjct 1955306 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 1955260 Score = 174 bits (192), Expect = 5e-38 Identities = 180/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || ||||| || || ||||| || || ||||| | Sbjct 1955092 TTTGCATACCACCACGCAGACGGAGGACCAGATGGAGGGTCGACTCCTTCTGGATATTGT 1955033 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||| || || || |||||||| ||||| || || || ||||| ||||| ||||||| Sbjct 1955032 AGTCAGACAAAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGAT 1954973 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| ||||| ||||| ||||| || || || || || ||||| | ||| || | Sbjct 1954972 CTGGGGGAATGCCTTCCTTATCTTGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAG 1954913 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | ||||| || || || | |||||||| || | ||||| || || ||||||||| Sbjct 1954912 GCTCAACCTCCAGGGTGATGGTCTTTCCCGTCAAAGTTTTAACGAAGATCTGCATT 1954857 Score = 123 bits (136), Expect = 8e-23 Identities = 463/718 (64%), Gaps = 10/718 (1%) Strand=Plus/Minus Query 349604 ACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAA 349663 || ||||| || | ||||| || ||||| || |||||| | ||| | || || || Sbjct 15349113 ACCGATGCCGTGGTCACTGTGCCCGCCTACTTCAATGATTCGCAGAGGCAGGCCACCAAG 15349054 Query 349664 GATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCA 349723 ||||| ||| ||| || || | ||||| || | || || ||||| || || || || Sbjct 15349053 GATGCGGGCGTCATAGCCGGTCTCAATGTGCTGCGCATCATCAATGAGCCAACGGCGGCG 15348994 Query 349724 GCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGAT 349783 || ||||| || || || || ||| | | | ||| ||| | || || |||||| Sbjct 15348993 GCCATTGCCTACGGCCTGGACAAACAAGGCGGCAGTGAACGGAATGTGCTGATCTTTGAT 15348934 Query 349784 TTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTT 349843 | || || || || || ||||| || | || || | || || || || ||||| || Sbjct 15348933 CTGGGCGGCGGCACCTTCGATGTTTCCGTGCTGACCATCGAGGATGGCATCTTTGAGGTG 15348874 Query 349844 AAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCG 349903 || || || || || || || ||| | || || || || | || || || | || Sbjct 15348873 AAGGCCACGGCAGGCGACACCCATTTGGGCGGCGAGGACATCGACAACCGCATGGTCAAT 15348814 Query 349904 CATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAG--ATAATCCTAGAG 349961 ||||| | | || ||| |||| ||||| | || || || ||| | ||| | | Sbjct 15348813 CATTTCATGCAGGAGTTTCAGCG-CAAGC-ACAAGCGAGATCTGAGCCAGAATAAGCGCG 15348756 Query 349962 CAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCC 350021 | |||| ||||| | || || ||||| || || ||||| | | || || | || | Sbjct 15348755 CTCTGCGACGCCTGCGTACGGCTTGTGAGCGGGCCAAGCGCACGCTTTCCTCCTCCACGC 15348696 Query 350022 AAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACAC 350081 | || || ||||| || || || || |||| || |||| | || | || | Sbjct 15348695 AGGCCAACATCGAAATCGACTCGCTCTTCGAGGGCATTGACTTCTACACGTCGTTGACGC 15348636 Query 350082 GTGCTCGGTTTGAAGAATTATGTATGGA--TCTTTTTAG-AGCAACAATGGATCCTGTGG 350138 |||| || ||||| || | | | ||| ||| || || |||| || |||| || |||| Sbjct 15348635 GTGCACGATTTGAGGAGCT--GAACGGAGATCTGTTCAGGAGCACCA-TGGAACCGGTGG 15348579 Query 350139 AAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTG 350198 || | | ||||| |||||| ||| |||||| |||| | || | || | Sbjct 15348578 CCAAGGCGCTGCGGGATGCCAAAATGGACAAGGGTCAGATACATGACATTGTCCTGGTGG 15348519 Query 350199 GTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAG 350258 |||| || || || || || || || || | | || || || || |||||||||| Sbjct 15348518 GTGGCTCCACTCGGATACCCAAGGTGCAGCGCCTGCTTCAGGACTTCTTCAATGGCAAAG 15348459 Query 350259 AACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316 | | | || || ||||| || || ||||| || ||||| ||||| ||||| || Sbjct 15348458 AGCTGAACAAGTCTATCAATCCGGACGAGGCTGTGGCCTATGGSGCTGCCGTTCAAGC 15348401 >seq6 Length=21059900 Score = 98.7 bits (108), Expect = 3e-15 Identities = 199/294 (68%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| ||||| || | |||||| | | ||||||||||| | || ||||| || | Sbjct 18320830 CCCGAGGAAATCTCTGCCATGGTTCTTGGAAAAATGAAGGAGACAGCCGAAGCCTACCTG 18320771 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || | | ||| || | ||||| | |||||||| ||||| || || ||||||||||| Sbjct 18320770 GGCAAGAAAGTCACCCACGCTGTCGTCACTGTACCCGCCTACTTCAACGATGCCCAGCGC 18320711 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || ||||| ||||||||| |||||| || | | || | | || || || || Sbjct 18320710 CAGGCGACAAAGGATGCTGGCGTCATTGCCGGCCTGCAGGTGATGCGTATCATCAACGAG 18320651 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAA-AATGAGTGACCAAGaaaaaaaTAT 349770 || || || || || ||||| || || || || || || ||| | || || || | Sbjct 18320650 CCGACCGCAGCTGCTATTGCCTACGGCCTGGACAAGAAGGAGGG----CGAGAAGAACGT 18320595 Query 349771 TCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGA 349824 || | || ||| | || || || || || ||||| || || || || |||| Sbjct 18320594 GCTGGTCTTCGATCTGGGCGGCGGCACCTTCGATGTCTCCCTGCTGACCATTGA 18320541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515098057471559