Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 1e-15 seq4 96.9 4e-15 >seq2 Length=4222574 Score = 98.7 bits (108), Expect = 1e-15 Identities = 182/267 (68%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||||||| ||| || ||||| | | ||| || ||||| || Sbjct 3935357 GTGAAGATGTAACGAGCGCTTGCACAATCTTTACCACCGGTTAAACGTGTGCCGAACTGA 3935416 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | || || | | || | ||||| | || ||||| || || ||||| || || Sbjct 3935417 CCGCGAGGTTCTAGCAAATTTATATTGTTCGATCCGACAAAATTCTGTGCCAAATTTACT 3935476 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || || ||| | ||| || || || || || | | |||||||| |||| Sbjct 3935477 ATAGTCATCTGCAGGGACATCTCGCCGTGATGGTATGCTGACATTTCCGCCACCGAGCCG 3935536 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 | ||||||||||| || | || | | ||| ||||| ||| | | | |||||| Sbjct 3935537 GATAGCTGAGCCACTTTTACCTCCCTCTTGTCGTTACGCTTGAAGCAAGTAAACATCACC 3935596 Query 117545 TTGCGCTGACTTGGCTTCAGACCATCC 117571 || ||||||| ||||| || |||||| Sbjct 3935597 TTACGCTGACCAGGCTTTAGGCCATCC 3935623 >seq4 Length=22154029 Score = 96.9 bits (106), Expect = 4e-15 Identities = 345/529 (65%), Gaps = 29/529 (5%) Strand=Plus/Plus Query 74477 CTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCGAAAGGGTT 74536 ||| || |||||||| || || || |||| |||||| ||||||| || ||| || || Sbjct 3240344 CTTCTCGAAAAAGTTAGTTTTGCCATCCAGCGAGATCATCTCCATGAAGGTGAATGGATT 3240403 Query 74537 CTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTG-----CCATGAGGCGATCCGCCACA 74591 ||| | | ||| || | | || | || | | ||| || |||||||||||| Sbjct 3240404 CTTCGTATTGTAGAT-----TTTGCCAACACCGAGTTCCACCAGCAGACGATCCGCCACA 3240458 Query 74592 AATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCACGGCAGTGCC 74651 |||| ||| || || | ||| | | || |||||| || | ||| ||||| || Sbjct 3240459 AATTCAATATATTGGGACATCAATGCACAATTCATGCCAATCAAATTGACGGGCAGAGCA 3240518 Query 74652 TCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA--ATCTTG-TGAATGTCT 74708 || |||| |||||| ||| | | | || ||| || | |||| | ||| || Sbjct 3240519 TCTGTGAGAAACTCTTGCTCAA--TGGTAACAGCATCCGAGATAATCTCGATGATACGCT 3240576 Query 74709 TT-GGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCACGGCAAACTCCTGATGCGA 74767 || |||| | || | | || || | | | | | || ||||| || |||| | Sbjct 3240577 CCCGGCTGGGC-CGTTGCAC-CAAATGCCGGAACATCATGACAGCAAAGTCACAATGCAA 3240634 Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||| || || | ||||| ||||| || |||| || || ||||| || |||||||| Sbjct 3240635 GCCCTCGTCGCGTGAGATCAACTCATTGGAGAACGTCAGACCTGGCATCAGACCACGCTT 3240694 Query 74828 CTTCAACCAAAAGAT---GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGC 74884 ||||| ||||||||| |||| ||| || ||||||||||| || || || || Sbjct 3240695 CTTCAGCCAAAAGATCGAGGCA---AAGCTTCCGCTGAAGAAGATTCCCTCCACGGCAGC 3240751 Query 74885 AAAGGCGACAAGGCGTTGCGCGAA----CGGTGCATCGGAAGTCATCCAAGTCTGAGCCC 74940 ||| |||| || | | ||| || || || | || | ||||||| | |||| Sbjct 3240752 AAACGCGATAATTC-TCTCGCCAAAGTTCGCCGCCTTCGATGAAATCCAAGAGAGCGCCC 3240810 Query 74941 ATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAG 74989 | ||||| ||||| ||||| || || | || || || || | ||| || Sbjct 3240811 AATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACAG 3240859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547160915869400