Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq2 98.7 1e-15
seq4 96.9 4e-15
>seq2
Length=4222574
Score = 98.7 bits (108), Expect = 1e-15
Identities = 182/267 (68%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| |||||||||| ||||||| ||| || ||||| | | ||| || ||||| ||
Sbjct 3935357 GTGAAGATGTAACGAGCGCTTGCACAATCTTTACCACCGGTTAAACGTGTGCCGAACTGA 3935416
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|| | || || | | || | ||||| | || ||||| || || ||||| || ||
Sbjct 3935417 CCGCGAGGTTCTAGCAAATTTATATTGTTCGATCCGACAAAATTCTGTGCCAAATTTACT 3935476
Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484
|| || || ||| | ||| || || || || || | | |||||||| ||||
Sbjct 3935477 ATAGTCATCTGCAGGGACATCTCGCCGTGATGGTATGCTGACATTTCCGCCACCGAGCCG 3935536
Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544
| ||||||||||| || | || | | ||| ||||| ||| | | | ||||||
Sbjct 3935537 GATAGCTGAGCCACTTTTACCTCCCTCTTGTCGTTACGCTTGAAGCAAGTAAACATCACC 3935596
Query 117545 TTGCGCTGACTTGGCTTCAGACCATCC 117571
|| ||||||| ||||| || ||||||
Sbjct 3935597 TTACGCTGACCAGGCTTTAGGCCATCC 3935623
>seq4
Length=22154029
Score = 96.9 bits (106), Expect = 4e-15
Identities = 345/529 (65%), Gaps = 29/529 (5%)
Strand=Plus/Plus
Query 74477 CTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCGAAAGGGTT 74536
||| || |||||||| || || || |||| |||||| ||||||| || ||| || ||
Sbjct 3240344 CTTCTCGAAAAAGTTAGTTTTGCCATCCAGCGAGATCATCTCCATGAAGGTGAATGGATT 3240403
Query 74537 CTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTG-----CCATGAGGCGATCCGCCACA 74591
||| | | ||| || | | || | || | | ||| || ||||||||||||
Sbjct 3240404 CTTCGTATTGTAGAT-----TTTGCCAACACCGAGTTCCACCAGCAGACGATCCGCCACA 3240458
Query 74592 AATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCACGGCAGTGCC 74651
|||| ||| || || | ||| | | || |||||| || | ||| ||||| ||
Sbjct 3240459 AATTCAATATATTGGGACATCAATGCACAATTCATGCCAATCAAATTGACGGGCAGAGCA 3240518
Query 74652 TCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA--ATCTTG-TGAATGTCT 74708
|| |||| |||||| ||| | | | || ||| || | |||| | ||| ||
Sbjct 3240519 TCTGTGAGAAACTCTTGCTCAA--TGGTAACAGCATCCGAGATAATCTCGATGATACGCT 3240576
Query 74709 TT-GGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCACGGCAAACTCCTGATGCGA 74767
|| |||| | || | | || || | | | | | || ||||| || |||| |
Sbjct 3240577 CCCGGCTGGGC-CGTTGCAC-CAAATGCCGGAACATCATGACAGCAAAGTCACAATGCAA 3240634
Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827
||| || || | ||||| ||||| || |||| || || ||||| || ||||||||
Sbjct 3240635 GCCCTCGTCGCGTGAGATCAACTCATTGGAGAACGTCAGACCTGGCATCAGACCACGCTT 3240694
Query 74828 CTTCAACCAAAAGAT---GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGC 74884
||||| ||||||||| |||| ||| || ||||||||||| || || || ||
Sbjct 3240695 CTTCAGCCAAAAGATCGAGGCA---AAGCTTCCGCTGAAGAAGATTCCCTCCACGGCAGC 3240751
Query 74885 AAAGGCGACAAGGCGTTGCGCGAA----CGGTGCATCGGAAGTCATCCAAGTCTGAGCCC 74940
||| |||| || | | ||| || || || | || | ||||||| | ||||
Sbjct 3240752 AAACGCGATAATTC-TCTCGCCAAAGTTCGCCGCCTTCGATGAAATCCAAGAGAGCGCCC 3240810
Query 74941 ATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAG 74989
| ||||| ||||| ||||| || || | || || || || | ||| ||
Sbjct 3240811 AATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACAG 3240859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547160915869400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |