Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3 185 1e-41 seq2 158 1e-33 seq6 95.1 1e-14 >seq3 Length=21835025 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || || |||||||| || ||||| ||||| ||| || Sbjct 1955260 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCATCC 1955319 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || |||||||||| |||||||||||||| || ||||| ||||| ||| Sbjct 1955320 GATACCATTGAGAACGTGAAGGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAG 1955379 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || |||||||| || |||| ||| ||| | | || || ||| Sbjct 1955380 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCCGATTACAAT 1955439 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || ||||||||| | || | ||||| || ||||| Sbjct 1955440 ATTCAGAAGGAGTCTACTCTTCATTTGGTTCTACGTCTGCGTGGTGG 1955486 Score = 156 bits (172), Expect = 5e-33 Identities = 176/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 27397 ATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTT 27456 ||||| | |||||| ||||| || || || | || || ||||| || || || |||||| Sbjct 1954849 ATTACCAAAATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCCTGGAGGTT 1954908 Query 27457 GAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCT 27516 ||| | |||| ||||| || | ||||| || ||||| || ||||| || ||||| Sbjct 1954909 GAGCCTTCCGATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAAGGCATTCCC 1954968 Query 27517 CCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCA 27576 ||||| ||||||||||| || || || || |||||||| || |||| ||| || | | Sbjct 1954969 CCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTTTGTCT 1955028 Query 27577 GACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| ||| |||| ||||| || || || ||||| ||| | ||||| || ||||| Sbjct 1955029 GACTACAATATCCAGAAGGAGTCGACCCTCCATCTGGTCCTCCGTCTGCGTGGTGG 1955084 >seq2 Length=4222574 Score = 158 bits (174), Expect = 1e-33 Identities = 183/244 (75%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 27390 CAGAAATA-TTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTC 27448 |||||| | |||| | |||||||||||| || || || || ||||||||||| ||||| Sbjct 180053 CAGAAACAGTTACAA-AATGCAAATCTTCGTKAAAACTCTCACCGGCAAGACCATTACCT 180111 Query 27449 TTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGG 27508 | ||||| ||| | ||| | ||| | ||| | ||||| || || |||||||| || | Sbjct 180112 TGGAGGTCGAGCCCTCTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAG 180171 Query 27509 GAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTA 27568 | || || ||||| ||||||||||| || ||||| || ||||| || ||||||| || | Sbjct 180172 GGATCCCACCAGATCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGACGCA 180231 Query 27569 CCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCG 27628 | ||| | ||||| || | || ||||| |||||| | || |||| | ||||| || | Sbjct 180232 CTCTATCCGACTACAACATTCAGAAGGAGTCCACTTTGCACTTAGTGCTCCGTCTGCGTG 180291 Query 27629 GTGG 27632 |||| Sbjct 180292 GTGG 180295 Score = 107 bits (118), Expect = 2e-18 Identities = 278/422 (66%), Gaps = 4/422 (1%) Strand=Plus/Minus Query 31983 GGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTC 32042 ||| ||||| |||||| ||||| |||||||| | | ||| ||||| ||| Sbjct 3935623 GGATGGCCTAAAGCCTGGTCAGCGTAAGGTGATGTTTACTTGCTTCAAGCGTAACGACAA 3935564 Query 32043 GAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCA 32102 ||| || | || ||||| ||||| || |||| ||||| || | || || || || Sbjct 3935563 GAGGGAGGTAAAAGTGGCTCAGCTATCCGGCTCGGTGGCGGAAATGTCAGCATACCATCA 3935504 Query 32103 CGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAA 32162 ||||||| ||| || ||| || || || || | || ||||| |||||||| | || Sbjct 3935503 CGGCGAGATGTCCCTGCAGATGACTATAGTAAATTTGGCACAGAATTTTGTCGGATCGAA 3935444 Query 32163 TAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGA 32222 || | || || || || || || ||||| || || || | ||||||| || || Sbjct 3935443 CAATATAAATTTGCTAGAACCTCGCGGTCAGTTCGGCACACGTTTAACCGGTGGTAAAGA 3935384 Query 32223 TGCTGCGAGCTCCCGTTACATCTTCAC--CCGTCTCGCACCTTCGACGCGCAAGATTTTC 32280 | ||| ||| | |||||||||||||| | |||| ||| || | || | Sbjct 3935383 TTGTGCAAGCGCTCGTTACATCTTCACATTGATGTCGCCTCTT--ACAAGACTTATATAT 3935326 Query 32281 GACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCG 32340 |||| | ||| ||| | |||| |||| | | || ||||| ||||| | || || Sbjct 3935325 CACCCATTGGATGATCCCTTGCTGCAGTATCAGGTGGACGACGGCCAGCGCATTGAACCC 3935266 Query 32341 GTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACG 32400 ||| || | || | |||| ||| |||||||||| || || || ||||| || || Sbjct 3935265 TTGTGGTATATACCTATTATTCCTATGGTCTTGGTGAATGGCGCCGAGGGCATTGGCACT 3935206 Query 32401 GG 32402 || Sbjct 3935205 GG 3935204 >seq6 Length=21059900 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/163 (74%), Gaps = 3/163 (2%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || || ||||||||||| ||||| ||||| ||||||||| | || || ||| Sbjct 7471285 AAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAGCAGCGTTTGATCTTCGCT 7471226 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| || ||||||| || || || | ||||| || | || ||||| || ||| Sbjct 7471225 GGCAAGCAGCTGGAGGATGGGCGCACTCTGTCCGACTACAACATTCAGAAGGAGTCTACT 7471166 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAAAGTT 27646 | || | || | ||||| || || || ||| ||||| || Sbjct 7471165 TTACACTTGGTGCTCCGTCTACGTGGAGG-CAA--TTAAATTT 7471126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570252991129360