Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq3 185 1e-41
seq2 158 1e-33
seq6 95.1 1e-14
>seq3
Length=21835025
Score = 185 bits (204), Expect = 1e-41
Identities = 177/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || ||||| || || |||||||| || ||||| ||||| ||| ||
Sbjct 1955260 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCATCC 1955319
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| || |||||||||| |||||||||||||| || ||||| ||||| |||
Sbjct 1955320 GATACCATTGAGAACGTGAAGGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAG 1955379
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || || || |||||||| || |||| ||| ||| | | || || |||
Sbjct 1955380 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCCGATTACAAT 1955439
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || ||||| || ||||||||| | || | ||||| || |||||
Sbjct 1955440 ATTCAGAAGGAGTCTACTCTTCATTTGGTTCTACGTCTGCGTGGTGG 1955486
Score = 156 bits (172), Expect = 5e-33
Identities = 176/236 (75%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 27397 ATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTT 27456
||||| | |||||| ||||| || || || | || || ||||| || || || ||||||
Sbjct 1954849 ATTACCAAAATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCCTGGAGGTT 1954908
Query 27457 GAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCT 27516
||| | |||| ||||| || | ||||| || ||||| || ||||| || |||||
Sbjct 1954909 GAGCCTTCCGATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAAGGCATTCCC 1954968
Query 27517 CCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCA 27576
||||| ||||||||||| || || || || |||||||| || |||| ||| || | |
Sbjct 1954969 CCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTTTGTCT 1955028
Query 27577 GACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||| ||| |||| ||||| || || || ||||| ||| | ||||| || |||||
Sbjct 1955029 GACTACAATATCCAGAAGGAGTCGACCCTCCATCTGGTCCTCCGTCTGCGTGGTGG 1955084
>seq2
Length=4222574
Score = 158 bits (174), Expect = 1e-33
Identities = 183/244 (75%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 27390 CAGAAATA-TTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTC 27448
|||||| | |||| | |||||||||||| || || || || ||||||||||| |||||
Sbjct 180053 CAGAAACAGTTACAA-AATGCAAATCTTCGTKAAAACTCTCACCGGCAAGACCATTACCT 180111
Query 27449 TTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGG 27508
| ||||| ||| | ||| | ||| | ||| | ||||| || || |||||||| || |
Sbjct 180112 TGGAGGTCGAGCCCTCTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAG 180171
Query 27509 GAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTA 27568
| || || ||||| ||||||||||| || ||||| || ||||| || ||||||| || |
Sbjct 180172 GGATCCCACCAGATCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGACGCA 180231
Query 27569 CCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCG 27628
| ||| | ||||| || | || ||||| |||||| | || |||| | ||||| || |
Sbjct 180232 CTCTATCCGACTACAACATTCAGAAGGAGTCCACTTTGCACTTAGTGCTCCGTCTGCGTG 180291
Query 27629 GTGG 27632
||||
Sbjct 180292 GTGG 180295
Score = 107 bits (118), Expect = 2e-18
Identities = 278/422 (66%), Gaps = 4/422 (1%)
Strand=Plus/Minus
Query 31983 GGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTC 32042
||| ||||| |||||| ||||| |||||||| | | ||| ||||| |||
Sbjct 3935623 GGATGGCCTAAAGCCTGGTCAGCGTAAGGTGATGTTTACTTGCTTCAAGCGTAACGACAA 3935564
Query 32043 GAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCA 32102
||| || | || ||||| ||||| || |||| ||||| || | || || || ||
Sbjct 3935563 GAGGGAGGTAAAAGTGGCTCAGCTATCCGGCTCGGTGGCGGAAATGTCAGCATACCATCA 3935504
Query 32103 CGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAA 32162
||||||| ||| || ||| || || || || | || ||||| |||||||| | ||
Sbjct 3935503 CGGCGAGATGTCCCTGCAGATGACTATAGTAAATTTGGCACAGAATTTTGTCGGATCGAA 3935444
Query 32163 TAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGA 32222
|| | || || || || || || ||||| || || || | ||||||| || ||
Sbjct 3935443 CAATATAAATTTGCTAGAACCTCGCGGTCAGTTCGGCACACGTTTAACCGGTGGTAAAGA 3935384
Query 32223 TGCTGCGAGCTCCCGTTACATCTTCAC--CCGTCTCGCACCTTCGACGCGCAAGATTTTC 32280
| ||| ||| | |||||||||||||| | |||| ||| || | || |
Sbjct 3935383 TTGTGCAAGCGCTCGTTACATCTTCACATTGATGTCGCCTCTT--ACAAGACTTATATAT 3935326
Query 32281 GACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCG 32340
|||| | ||| ||| | |||| |||| | | || ||||| ||||| | || ||
Sbjct 3935325 CACCCATTGGATGATCCCTTGCTGCAGTATCAGGTGGACGACGGCCAGCGCATTGAACCC 3935266
Query 32341 GTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACG 32400
||| || | || | |||| ||| |||||||||| || || || ||||| || ||
Sbjct 3935265 TTGTGGTATATACCTATTATTCCTATGGTCTTGGTGAATGGCGCCGAGGGCATTGGCACT 3935206
Query 32401 GG 32402
||
Sbjct 3935205 GG 3935204
>seq6
Length=21059900
Score = 95.1 bits (104), Expect = 1e-14
Identities = 120/163 (74%), Gaps = 3/163 (2%)
Strand=Plus/Minus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||||| || || || ||||||||||| ||||| ||||| ||||||||| | || || |||
Sbjct 7471285 AAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAGCAGCGTTTGATCTTCGCT 7471226
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| ||||| || ||||||| || || || | ||||| || | || ||||| || |||
Sbjct 7471225 GGCAAGCAGCTGGAGGATGGGCGCACTCTGTCCGACTACAACATTCAGAAGGAGTCTACT 7471166
Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAAAGTT 27646
| || | || | ||||| || || || ||| ||||| ||
Sbjct 7471165 TTACACTTGGTGCTCCGTCTACGTGGAGG-CAA--TTAAATTT 7471126
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570252991129360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |