Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4 188 6e-43 seq3 168 6e-37 seq2 140 3e-28 seq6 91.5 1e-13 >seq4 Length=22154029 Score = 188 bits (208), Expect = 6e-43 Identities = 203/269 (75%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 135473 TTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGC 135532 ||||||||| |||| || | ||||| | || |||||||||||||| || ||||| Sbjct 611707 TTGTGGAACTCGGCCCAGCTACAGCTGGTGAAGGAGGGCAAAATGCACGGTTTCTTGCGC 611766 Query 135533 ATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACAC 135592 ||||||||||| |||||||| || |||||| | | | |||| | |||||||| | | Sbjct 611767 ATGTATTGGGCCAAAAAGATTTTAGAATGGACCGAAACGCCGGAGCAGGCGCTAGAGTAT 611826 Query 135593 GCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGT 135652 ||| | || || ||| | |||||| | ||||| |||||| | ||||||||||| ||| Sbjct 611827 AGCATACTATTGAACGATAAGTACAGTCTGGATGGGCGCGATCCGAATGGCTACGTTGGT 611886 Query 135653 TGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGC 135712 || |||||||| || | || | ||||| ||||| |||||||| ||| | || || Sbjct 611887 TGCATGTGGTCCATCGGTGGCATTCACGACCAAGGCTGGAAGGAACGCGCGATATTCGGT 611946 Query 135713 AAGATTCGCTATATGAACTATGACGGTTG 135741 ||||||||||||||||||||| | || || Sbjct 611947 AAGATTCGCTATATGAACTATCAAGGCTG 611975 >seq3 Length=21835025 Score = 168 bits (186), Expect = 6e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || ||||| |||||| | || ||||| || ||||| || ||| Sbjct 1955260 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCATCC 1955319 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || ||||| ||||| |||||||| || || ||||| Sbjct 1955320 GATACCATTGAGAACGTGAAGGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAG 1955379 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| ||| ||||||| || ||| | ||||||||||| Sbjct 1955380 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCCGATTACAAT 1955439 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| |||||||| || | ||||||||| | ||| |||| |||||| Sbjct 1955440 ATTCAGAAGGAGTCTACTCTTCATTTGGTTCTACGTCTGCGTGGTGGC 1955487 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||| |||| || ||| | || || || || || || || ||| Sbjct 1954858 ATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCCTGGAGGTTGAGCCTTCC 1954917 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| ||||| || |||||||| || |||||||| || || ||||| Sbjct 1954918 GATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAAGGCATTCCCCCAGATCAG 1954977 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| ||| ||||||| || || | || || ||||| Sbjct 1954978 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTTTGTCTGACTACAAT 1955037 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | ||| |||| | ||| |||| ||||| || Sbjct 1955038 ATCCAGAAGGAGTCGACCCTCCATCTGGTCCTCCGTCTGCGTGGTGGTAT 1955087 >seq2 Length=4222574 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||||| ||||||||| | ||||| | || || || || || Sbjct 180069 ATGCAAATCTTCGTKAAAACTCTCACCGGCAAGACCATTACCTTGGAGGTCGAGCCCTCT 180128 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || || ||||||||||| || ||||| ||||| Sbjct 180129 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGGATCCCACCAGATCAG 180188 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| || |||| || | || | ||||| |||||| Sbjct 180189 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGACGCACTCTATCCGACTACAAC 180248 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || || || || || | ||| |||| |||||||| Sbjct 180249 ATTCAGAAGGAGTCCACTTTGCACTTAGTGCTCCGTCTGCGTGGTGGCAT 180298 >seq6 Length=21059900 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || |||||||| || || || || || ||||| |||||||| || | ||| ||||| Sbjct 7471279 AAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAGCAGCGTTTGATCTTCGCTGGCAAG 7471220 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || |||| || | || | ||||| ||||||||||| |||||||| || ||||| Sbjct 7471219 CAGCTGGAGGATGGGCGCACTCTGTCCGACTACAACATTCAGAAGGAGTCTACTTTACAC 7471160 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCA 27216 ||||| | ||| | || || |||| Sbjct 7471159 TTGGTGCTCCGTCTACGTGGAGGCA 7471135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434874620026560