Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 9e-16 >seq2 Length=4222574 Score = 98.7 bits (108), Expect = 9e-16 Identities = 269/408 (66%), Gaps = 12/408 (3%) Strand=Plus/Plus Query 6563 TAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGA 6622 |||| || ||||| |||| |||||| || | || || || ||| ||| |||||| Sbjct 2651492 TAGACGTGAGCATCACCCAGCGTATGGACGAAATCGCCGGGCTTCAAACCCGTCACATGA 2651551 Query 6623 GCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATG 6682 ||||||||||| || | || || || || || ||||| || || || | |||||| Sbjct 2651552 GCGATCATGTAGGTCAACAAGGCATACGAGGCGATATTGAAGGGTACTCCCAGACCCATG 2651611 Query 6683 TCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCA------TTCGCGACGTAGAAT 6736 || | || ||||| || |||||||||| || ||| | || || |||||| Sbjct 2651612 TCGGCGCTGCGCTGATACAGTTGGCAGGACAATTCACCACGCGACTGCGATACATAGAAT 2651671 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796 ||| ||| |||||| || || | ||||| | || | ||| || ||||| ||| Sbjct 2651672 TGGACCAGGCAGTGGCATGGCGGTAATGCCATTTGGGGTATGTCCAAAGGATTCCAGGCG 2651731 Query 6797 CACATCACGATCCTTCTGTCATCAGGGTT-CCGCTTCAAGGTGTCGATCACGTACTGCAG 6855 |||| | ||| | | || | || || || | | || ||||| || | |||| Sbjct 2651732 GACATTATGATGCGACGATCCGCCGGATTGTTGCGT-ATAGTATCGATGACCTGTTGCAA 2651790 Query 6856 CTGGTCCGCTCCCTGTCCCGAATAGTC--CGCTTCGCTCCCCCGATACTCCGCCCCAAAG 6913 ||| || ||||| || | ||||| || | | | || ||| | || |||||| Sbjct 2651791 CTGATCAATACCCTGGCCTGTGTAGTCGTCGGTGCATTTACC--ATATTTAGCGCCAAAG 2651848 Query 6914 TGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGA 6961 || | |||||| || || ||||| || |||| || ||| |||| ||| Sbjct 2651849 TGACGCCACTGAAAGCCATAGACTGGACCCAGATCACCCACCTCGCGA 2651896 Score = 98.7 bits (108), Expect = 9e-16 Identities = 269/408 (66%), Gaps = 12/408 (3%) Strand=Plus/Minus Query 34384 TCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGA 34443 ||| |||| ||| || |||| || ||||| || || |||||| | |||||||| || | Sbjct 2651896 TCGCGAGGTGGGTGATCTGGGTCCAGTCTATGGCTTTCAGTGGCGTCACTTTGGCGCTAA 2651837 Query 34444 GTATCGGGGGAGCGAAGCG--GACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTG 34501 ||| || | | | || ||||| | || ||||| || ||| |||| | || Sbjct 2651836 ATAT--GGTAAATGCACCGACGACTACACAGGCCAGGGTATTGATCAGTTGCAACAGGTC 2651779 Query 34502 ATCGACACCTTGAAGCGG-AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCC 34560 ||||| || | | || || || | || | | ||| | |||| ||| ||||| || Sbjct 2651778 ATCGATACTAT-ACGCAACAATCCGGCGGATCGTCGCATCATAATGTCCGCCTGGAATCC 2651720 Query 34561 GAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGC 34620 ||| | || | ||||| | || || |||||| ||| ||||||||| || | Sbjct 2651719 TTTGGACATACCCCAAATGGCATTACCGCCATGCCACTGCCTGGTCCAATTCTATGTATC 2651660 Query 34621 GAA------TGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGG 34674 | | ||| || |||||||||| || ||||| || | |||||||| | || Sbjct 2651659 GCAGTCGCGTGGTGAATTGTCCTGCCAACTGTATCAGCGCAGCGCCGACATGGGTCTGGG 2651600 Query 34675 GGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGG 34734 || || ||||| || || || || || | || ||||||||||||||||| ||| Sbjct 2651599 AGTACCCTTCAATATCGCCTCGTATGCCTTGTTGACCTACATGATCGCTCATGTGACGGG 2651540 Query 34735 GTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTA 34782 ||| || || || | || |||||| |||| ||||| || |||| Sbjct 2651539 TTTGAAGCCCGGCGATTTCGTCCATACGCTGGGTGATGCTCACGTCTA 2651492 Score = 84.2 bits (92), Expect = 2e-11 Identities = 169/251 (67%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 6563 TAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGA 6622 |||| || ||||| |||| |||||| || | || || || ||| ||| |||||| Sbjct 2650295 TAGACGTGAGCATCACCCAGCGTATGGACGAAATCGCCGGGCTTCAAACCCGTCACATGA 2650354 Query 6623 GCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATG 6682 ||||||||||| || | || || || || || ||||| || || || | |||||| Sbjct 2650355 GCGATCATGTAGGTCAACAAGGCATACGAGGCGATATTGAAGGGTACTCCCAGACCCATG 2650414 Query 6683 TCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCA------TTCGCGACGTAGAAT 6736 || | || ||||| || |||||||||| || ||| | || || |||||| Sbjct 2650415 TCGGCGCTGCGCTGATACAGTTGGCAGGACAATTCACCACGCGACTGCGATACATAGAAT 2650474 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796 ||| ||| |||||| || || | ||||| | || | ||| || ||||| ||| Sbjct 2650475 TGGACCAGGCAGTGGCATGGCGGTAATGCCATTTGGGGTATGTCCAAAGGATTCCAGGCG 2650534 Query 6797 CACATCACGAT 6807 |||| | ||| Sbjct 2650535 GACATTATGAT 2650545 Score = 84.2 bits (92), Expect = 2e-11 Identities = 169/251 (67%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 34538 ATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCAC 34597 ||| | |||| ||| ||||| || ||| | || | ||||| | || || |||||| Sbjct 2650545 ATCATAATGTCCGCCTGGAATCCTTTGGACATACCCCAAATGGCATTACCGCCATGCCAC 2650486 Query 34598 ACCCTCTGCCAATTCTACGTCGCGAA------TGGGGAGCTGTCCTGCCAGCTCTATCAA 34651 ||| ||||||||| || || | ||| || |||||||||| || ||||| Sbjct 2650485 TGCCTGGTCCAATTCTATGTATCGCAGTCGCGTGGTGAATTGTCCTGCCAACTGTATCAG 2650426 Query 34652 CGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACG 34711 || | |||||||| | || || || ||||| || || || || || | || Sbjct 2650425 CGCAGCGCCGACATGGGTCTGGGAGTACCCTTCAATATCGCCTCGTATGCCTTGTTGACC 2650366 Query 34712 TACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGAT 34771 ||||||||||||||||| ||| ||| || || || | || |||||| |||| ||| Sbjct 2650365 TACATGATCGCTCATGTGACGGGTTTGAAGCCCGGCGATTTCGTCCATACGCTGGGTGAT 2650306 Query 34772 GCGCATATCTA 34782 || || |||| Sbjct 2650305 GCTCACGTCTA 2650295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448217276786160