Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq2 98.7 9e-16
>seq2
Length=4222574
Score = 98.7 bits (108), Expect = 9e-16
Identities = 269/408 (66%), Gaps = 12/408 (3%)
Strand=Plus/Plus
Query 6563 TAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGA 6622
|||| || ||||| |||| |||||| || | || || || ||| ||| ||||||
Sbjct 2651492 TAGACGTGAGCATCACCCAGCGTATGGACGAAATCGCCGGGCTTCAAACCCGTCACATGA 2651551
Query 6623 GCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATG 6682
||||||||||| || | || || || || || ||||| || || || | ||||||
Sbjct 2651552 GCGATCATGTAGGTCAACAAGGCATACGAGGCGATATTGAAGGGTACTCCCAGACCCATG 2651611
Query 6683 TCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCA------TTCGCGACGTAGAAT 6736
|| | || ||||| || |||||||||| || ||| | || || ||||||
Sbjct 2651612 TCGGCGCTGCGCTGATACAGTTGGCAGGACAATTCACCACGCGACTGCGATACATAGAAT 2651671
Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796
||| ||| |||||| || || | ||||| | || | ||| || ||||| |||
Sbjct 2651672 TGGACCAGGCAGTGGCATGGCGGTAATGCCATTTGGGGTATGTCCAAAGGATTCCAGGCG 2651731
Query 6797 CACATCACGATCCTTCTGTCATCAGGGTT-CCGCTTCAAGGTGTCGATCACGTACTGCAG 6855
|||| | ||| | | || | || || || | | || ||||| || | ||||
Sbjct 2651732 GACATTATGATGCGACGATCCGCCGGATTGTTGCGT-ATAGTATCGATGACCTGTTGCAA 2651790
Query 6856 CTGGTCCGCTCCCTGTCCCGAATAGTC--CGCTTCGCTCCCCCGATACTCCGCCCCAAAG 6913
||| || ||||| || | ||||| || | | | || ||| | || ||||||
Sbjct 2651791 CTGATCAATACCCTGGCCTGTGTAGTCGTCGGTGCATTTACC--ATATTTAGCGCCAAAG 2651848
Query 6914 TGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGA 6961
|| | |||||| || || ||||| || |||| || ||| |||| |||
Sbjct 2651849 TGACGCCACTGAAAGCCATAGACTGGACCCAGATCACCCACCTCGCGA 2651896
Score = 98.7 bits (108), Expect = 9e-16
Identities = 269/408 (66%), Gaps = 12/408 (3%)
Strand=Plus/Minus
Query 34384 TCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGA 34443
||| |||| ||| || |||| || ||||| || || |||||| | |||||||| || |
Sbjct 2651896 TCGCGAGGTGGGTGATCTGGGTCCAGTCTATGGCTTTCAGTGGCGTCACTTTGGCGCTAA 2651837
Query 34444 GTATCGGGGGAGCGAAGCG--GACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTG 34501
||| || | | | || ||||| | || ||||| || ||| |||| | ||
Sbjct 2651836 ATAT--GGTAAATGCACCGACGACTACACAGGCCAGGGTATTGATCAGTTGCAACAGGTC 2651779
Query 34502 ATCGACACCTTGAAGCGG-AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCC 34560
||||| || | | || || || | || | | ||| | |||| ||| ||||| ||
Sbjct 2651778 ATCGATACTAT-ACGCAACAATCCGGCGGATCGTCGCATCATAATGTCCGCCTGGAATCC 2651720
Query 34561 GAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGC 34620
||| | || | ||||| | || || |||||| ||| ||||||||| || |
Sbjct 2651719 TTTGGACATACCCCAAATGGCATTACCGCCATGCCACTGCCTGGTCCAATTCTATGTATC 2651660
Query 34621 GAA------TGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGG 34674
| | ||| || |||||||||| || ||||| || | |||||||| | ||
Sbjct 2651659 GCAGTCGCGTGGTGAATTGTCCTGCCAACTGTATCAGCGCAGCGCCGACATGGGTCTGGG 2651600
Query 34675 GGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGG 34734
|| || ||||| || || || || || | || ||||||||||||||||| |||
Sbjct 2651599 AGTACCCTTCAATATCGCCTCGTATGCCTTGTTGACCTACATGATCGCTCATGTGACGGG 2651540
Query 34735 GTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTA 34782
||| || || || | || |||||| |||| ||||| || ||||
Sbjct 2651539 TTTGAAGCCCGGCGATTTCGTCCATACGCTGGGTGATGCTCACGTCTA 2651492
Score = 84.2 bits (92), Expect = 2e-11
Identities = 169/251 (67%), Gaps = 6/251 (2%)
Strand=Plus/Plus
Query 6563 TAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGA 6622
|||| || ||||| |||| |||||| || | || || || ||| ||| ||||||
Sbjct 2650295 TAGACGTGAGCATCACCCAGCGTATGGACGAAATCGCCGGGCTTCAAACCCGTCACATGA 2650354
Query 6623 GCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATG 6682
||||||||||| || | || || || || || ||||| || || || | ||||||
Sbjct 2650355 GCGATCATGTAGGTCAACAAGGCATACGAGGCGATATTGAAGGGTACTCCCAGACCCATG 2650414
Query 6683 TCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCA------TTCGCGACGTAGAAT 6736
|| | || ||||| || |||||||||| || ||| | || || ||||||
Sbjct 2650415 TCGGCGCTGCGCTGATACAGTTGGCAGGACAATTCACCACGCGACTGCGATACATAGAAT 2650474
Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796
||| ||| |||||| || || | ||||| | || | ||| || ||||| |||
Sbjct 2650475 TGGACCAGGCAGTGGCATGGCGGTAATGCCATTTGGGGTATGTCCAAAGGATTCCAGGCG 2650534
Query 6797 CACATCACGAT 6807
|||| | |||
Sbjct 2650535 GACATTATGAT 2650545
Score = 84.2 bits (92), Expect = 2e-11
Identities = 169/251 (67%), Gaps = 6/251 (2%)
Strand=Plus/Minus
Query 34538 ATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCAC 34597
||| | |||| ||| ||||| || ||| | || | ||||| | || || ||||||
Sbjct 2650545 ATCATAATGTCCGCCTGGAATCCTTTGGACATACCCCAAATGGCATTACCGCCATGCCAC 2650486
Query 34598 ACCCTCTGCCAATTCTACGTCGCGAA------TGGGGAGCTGTCCTGCCAGCTCTATCAA 34651
||| ||||||||| || || | ||| || |||||||||| || |||||
Sbjct 2650485 TGCCTGGTCCAATTCTATGTATCGCAGTCGCGTGGTGAATTGTCCTGCCAACTGTATCAG 2650426
Query 34652 CGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACG 34711
|| | |||||||| | || || || ||||| || || || || || | ||
Sbjct 2650425 CGCAGCGCCGACATGGGTCTGGGAGTACCCTTCAATATCGCCTCGTATGCCTTGTTGACC 2650366
Query 34712 TACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGAT 34771
||||||||||||||||| ||| ||| || || || | || |||||| |||| |||
Sbjct 2650365 TACATGATCGCTCATGTGACGGGTTTGAAGCCCGGCGATTTCGTCCATACGCTGGGTGAT 2650306
Query 34772 GCGCATATCTA 34782
|| || ||||
Sbjct 2650305 GCTCACGTCTA 2650295
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448217276786160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |