Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 1e-12 >seq2 Length=4222574 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 118480 TGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCT 118539 ||||| ||||||| |||||||| || | ||||| | ||| || || || | | || Sbjct 2650286 TGATTATTATAGACGTGAGCATCACCCAGCGTATGGACGAAATCGCCGGGCTTCAAACCC 2650345 Query 118540 GTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCC 118599 |||| ||||| |||||||| |||||||| || ||| | ||| || || || ||| Sbjct 2650346 GTCACATGAGCGATCATGTAGGTCAACAAGGCATACGAGGCGATATTGAAGGGTACTCCC 2650405 Query 118600 AGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGA 118637 ||||||||||| || | ||| |||| |||||| || Sbjct 2650406 AGACCCATGTCGGCGCTGCGCTGATACAGTTGGCAGGA 2650443 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 118480 TGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCT 118539 ||||| ||||||| |||||||| || | ||||| | ||| || || || | | || Sbjct 2651483 TGATTATTATAGACGTGAGCATCACCCAGCGTATGGACGAAATCGCCGGGCTTCAAACCC 2651542 Query 118540 GTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCC 118599 |||| ||||| |||||||| |||||||| || ||| | ||| || || || ||| Sbjct 2651543 GTCACATGAGCGATCATGTAGGTCAACAAGGCATACGAGGCGATATTGAAGGGTACTCCC 2651602 Query 118600 AGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGA 118637 ||||||||||| || | ||| |||| |||||| || Sbjct 2651603 AGACCCATGTCGGCGCTGCGCTGATACAGTTGGCAGGA 2651640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414436120785892