Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq3 87.8 1e-12 seq2 87.8 1e-12 >seq3 Length=21835025 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || ||||| || | || || ||||| || ||| |||| Sbjct 1955353 GACAAGGAAGGCATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAA 1955412 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||||||||||||||| || || || ||| ||| | ||||||||| | Sbjct 1955413 GATGGTCGCACCTTGTCCGATTACAATATTCAGAAGGAGTCTACTCTTCATTTGGTTCTA 1955472 Query 28003 CGTTTGCGTGGCGGCGAC 28020 ||| ||||||| ||| || Sbjct 1955473 CGTCTGCGTGGTGGCTAC 1955490 >seq2 Length=4222574 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||| || || |||||||| || || || ||||| | || ||||| | Sbjct 180066 AAAATGCAAATCTTCGTKAAAACTCTCACCGGCAAGACCATTACCTTGGAGGTCGAGCCC 180125 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| || | ||| ||||| || || ||||||||||| | || | Sbjct 180126 TCTGACACCATCGAGAAT--GTCAAGGCCAAGATCCAGGACAAAGAAGGGATCCCACCAG 180183 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || |||||||| || || |||| || | ||||| | ||||| | Sbjct 180184 ATCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGACGCACTCTATCCGACT 180243 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| || || ||| ||||||||| || || | ||| ||||||| ||| Sbjct 180244 ACAACATTCAGAAGGAGTCCACTTTGCACTTAGTGCTCCGTCTGCGTGGTGGC 180296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355827473551131