Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq3 87.8 1e-12
seq2 87.8 1e-12
>seq3
Length=21835025
Score = 87.8 bits (96), Expect = 1e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| ||||| |||| || ||||| || | || || ||||| || ||| ||||
Sbjct 1955353 GACAAGGAAGGCATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAA 1955412
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | |||| ||||||||||||||| || || || ||| ||| | ||||||||| |
Sbjct 1955413 GATGGTCGCACCTTGTCCGATTACAATATTCAGAAGGAGTCTACTCTTCATTTGGTTCTA 1955472
Query 28003 CGTTTGCGTGGCGGCGAC 28020
||| ||||||| ||| ||
Sbjct 1955473 CGTCTGCGTGGTGGCTAC 1955490
>seq2
Length=4222574
Score = 87.8 bits (96), Expect = 1e-12
Identities = 160/233 (69%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
||||||||||| || || |||||||| || || || ||||| | || ||||| |
Sbjct 180066 AAAATGCAAATCTTCGTKAAAACTCTCACCGGCAAGACCATTACCTTGGAGGTCGAGCCC 180125
Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
| ||| || | ||| ||||| || || ||||||||||| | || |
Sbjct 180126 TCTGACACCATCGAGAAT--GTCAAGGCCAAGATCCAGGACAAAGAAGGGATCCCACCAG 180183
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| ||||| || | || |||||||| || || |||| || | ||||| | ||||| |
Sbjct 180184 ATCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGACGCACTCTATCCGACT 180243
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017
||||||| || || ||| ||||||||| || || | ||| ||||||| |||
Sbjct 180244 ACAACATTCAGAAGGAGTCCACTTTGCACTTAGTGCTCCGTCTGCGTGGTGGC 180296
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355827473551131
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |