Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq3 89.7 4e-13
seq2 84.2 2e-11
>seq3
Length=21835025
Score = 89.7 bits (98), Expect = 4e-13
Identities = 151/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTC 39128
|||| |||||||| || || ||| || || ||||| ||||||| |||| || || |
Sbjct 1955474 CGTAGAACCAAATGAAGAGTAGACTCCTTCTGAATATTGTAATCGGACAAG-GTGCGACC 1955416
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
|| || || || ||||| || || || ||||||||||| || | ||| | || || ||
Sbjct 1955415 ATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTT 1955356
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248
|||| || || || | || | | |||||| | |||||| |||| |||||
Sbjct 1955355 GTCCTGAATCTTAGCCTTCACGTTCTCAATGGTATCGGATGGCTCCACCTCCAGAGTGAT 1955296
Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || || ||||| || || || |||||||||||
Sbjct 1955295 GGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 1955260
>seq2
Length=4222574
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||| || || | ||| ||| || || || || || |||| || || ||| | || ||
Sbjct 180278 CACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGATAGAGTGCGTCCATCCTC 180219
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193
||||| ||||| ||||| || ||||||||||| || |||||| | || |||||||||
Sbjct 180218 CAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGGATCCCT-TCTTTGTCCT 180160
Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| || |||| || | | || || | ||| || |||| || || | |
Sbjct 180159 GGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTAATGGTCT 180100
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
| || || || ||||| || ||||||||||| ||
Sbjct 180099 TGCCGGTGAGAGTTTTMACGAAGATTTGCATTTT 180066
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429503441844389
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |