Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 4e-13 seq2 84.2 2e-11 >seq3 Length=21835025 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTC 39128 |||| |||||||| || || ||| || || ||||| ||||||| |||| || || | Sbjct 1955474 CGTAGAACCAAATGAAGAGTAGACTCCTTCTGAATATTGTAATCGGACAAG-GTGCGACC 1955416 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || || || ||||| || || || ||||||||||| || | ||| | || || || Sbjct 1955415 ATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTT 1955356 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| || || || | || | | |||||| | |||||| |||| ||||| Sbjct 1955355 GTCCTGAATCTTAGCCTTCACGTTCTCAATGGTATCGGATGGCTCCACCTCCAGAGTGAT 1955296 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || ||||| || || || ||||||||||| Sbjct 1955295 GGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 1955260 >seq2 Length=4222574 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| || || | ||| ||| || || || || || |||| || || ||| | || || Sbjct 180278 CACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGATAGAGTGCGTCCATCCTC 180219 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||| ||||| ||||| || ||||||||||| || |||||| | || ||||||||| Sbjct 180218 CAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGGATCCCT-TCTTTGTCCT 180160 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| || | | || || | ||| || |||| || || | | Sbjct 180159 GGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTAATGGTCT 180100 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | || || || ||||| || ||||||||||| || Sbjct 180099 TGCCGGTGAGAGTTTTMACGAAGATTTGCATTTT 180066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429503441844389