Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq2 127 1e-24
seq3 114 9e-21
>seq2
Length=4222574
Score = 127 bits (140), Expect = 1e-24
Identities = 157/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|||||||| || ||||| ||||| ||||| || || || || || | || || || ||
Sbjct 180066 AAAATGCAAATCTTCGTKAAAACTCTCACCGGCAAGACCATTACCTTGGAGGTCGAGCCC 180125
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| | || ||| | || | || | | ||||||||||| | || |||||
Sbjct 180126 TCTGACACCATCGAGAATGTCAAGGCCAAGA-TCCAGGACAAAGAAGGGATCCCACCAGA 180184
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||| |||||| | || ||||||||||| || ||||| || | ||||||| || ||| ||
Sbjct 180185 TCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGACGCACTCTATCCGACTA 180244
Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819
|||||| || || |||||||| || || |||||
Sbjct 180245 CAACATTCAGAAGGAGTCCACTTTGCACTTAGT 180277
>seq3
Length=21835025
Score = 114 bits (126), Expect = 9e-21
Identities = 151/208 (73%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 23600 AATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAG 23659
|||||| ||||||||||| ||||||||||| | |||||||| || ||||| || || |
Sbjct 1954848 AATTACC-AAAATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCCTGGAGG 1954906
Query 23660 TTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTAC 23719
|||| | | || || |||| | | || || ||| || || ||||| | |
Sbjct 1954907 TTGAGCCTTCCGATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAAGGCATTC 1954966
Query 23720 CGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAG 23779
| |||||||| |||||| | || || |||||||| ||||||||||| | ||||||||
Sbjct 1954967 CCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTTTGT 1955026
Query 23780 GCGATTACAACATACAAAAAGAGTCCAC 23807
|| ||||| || || || ||||| ||
Sbjct 1955027 CTGACTACAATATCCAGAAGGAGTCGAC 1955054
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || ||||| || || || || |||||||| || || || | |
Sbjct 1955260 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCATCC 1955319
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || |||| | | || || ||| ||||| ||||| | || ||||||||
Sbjct 1955320 GATACCATTGAGAACGTGAAGGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAG 1955379
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || || |||||||| ||||||||||| | ||||| || |||||||||
Sbjct 1955380 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCCGATTACAAT 1955439
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| || || ||||| || | ||||| ||| || | |||| || ||
Sbjct 1955440 ATTCAGAAGGAGTCTACTCTTCATTTGGTTCTACGTCTGCGTGGTGG 1955486
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337976425730924
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |