Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2 127 1e-24 seq3 114 9e-21 >seq2 Length=4222574 Score = 127 bits (140), Expect = 1e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || ||||| ||||| ||||| || || || || || | || || || || Sbjct 180066 AAAATGCAAATCTTCGTKAAAACTCTCACCGGCAAGACCATTACCTTGGAGGTCGAGCCC 180125 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | | ||||||||||| | || ||||| Sbjct 180126 TCTGACACCATCGAGAATGTCAAGGCCAAGA-TCCAGGACAAAGAAGGGATCCCACCAGA 180184 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || ||||||||||| || ||||| || | ||||||| || ||| || Sbjct 180185 TCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGACGCACTCTATCCGACTA 180244 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||||| || || |||||||| || || ||||| Sbjct 180245 CAACATTCAGAAGGAGTCCACTTTGCACTTAGT 180277 >seq3 Length=21835025 Score = 114 bits (126), Expect = 9e-21 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 23600 AATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAG 23659 |||||| ||||||||||| ||||||||||| | |||||||| || ||||| || || | Sbjct 1954848 AATTACC-AAAATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCCTGGAGG 1954906 Query 23660 TTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTAC 23719 |||| | | || || |||| | | || || ||| || || ||||| | | Sbjct 1954907 TTGAGCCTTCCGATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAAGGCATTC 1954966 Query 23720 CGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAG 23779 | |||||||| |||||| | || || |||||||| ||||||||||| | |||||||| Sbjct 1954967 CCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTTTGT 1955026 Query 23780 GCGATTACAACATACAAAAAGAGTCCAC 23807 || ||||| || || || ||||| || Sbjct 1955027 CTGACTACAATATCCAGAAGGAGTCGAC 1955054 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || || || || |||||||| || || || | | Sbjct 1955260 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCATCC 1955319 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || || ||| ||||| ||||| | || |||||||| Sbjct 1955320 GATACCATTGAGAACGTGAAGGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAG 1955379 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| ||||||||||| | ||||| || ||||||||| Sbjct 1955380 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCCGATTACAAT 1955439 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| || | ||||| ||| || | |||| || || Sbjct 1955440 ATTCAGAAGGAGTCTACTCTTCATTTGGTTCTACGTCTGCGTGGTGG 1955486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337976425730924