Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq3 145 2e-29
seq2 131 4e-25
seq6 100 7e-16
seq455 93.3 1e-13
>seq3
Length=21835025
Score = 145 bits (160), Expect = 2e-29
Identities = 161/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| || ||||| || || || || |||| |||||| || | |||||| | ||||||
Sbjct 1955069 AGGACCAGATGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAAGTGCGACCATCT 1955010
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| || |||||||| || || || || || || ||||| |||||||| |||
Sbjct 1955009 TCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTATCT 1954950
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| || || ||||| || || | || || || | ||||| |||
Sbjct 1954949 TGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAGGGTGATGGTC 1954890
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
|| |||||||||||||| | ||| | ||||||||
Sbjct 1954889 TTTCCCGTCAAAGTTTTAACGAAGATCTGCATTTT 1954855
Score = 132 bits (146), Expect = 1e-25
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570
|| ||||| || || || || | ||||||||||| ||| || | |||||||| || |||
Sbjct 1955462 TGAAGAGTAGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGACCATCTTCCAGTTGC 1955403
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| || |||||||| || || || || || || ||||| ||||||||||| || |||||
Sbjct 1955402 TTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGAATCTTA 1955343
Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690
|||||| || ||||| || || | ||||| || | ||||| |||||||| |||
Sbjct 1955342 GCCTTCACGTTCTCAATGGTATCGGATGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTC 1955283
Query 225691 AAAGTTTTTATGAACACTTGCAT 225713
| || || | ||| | ||||||
Sbjct 1955282 AGGGTCTTCACGAAGATTTGCAT 1955260
>seq2
Length=4222574
Score = 131 bits (144), Expect = 4e-25
Identities = 158/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| | |||||| || || || | ||||| |||| | ||| | |||||
Sbjct 180280 AGCACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGATAGAGTGCGTCCATCC 180221
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || || ||||| || || || || || || || || ||||| |||||
Sbjct 180220 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGGATCCCTTCTTTGTCC 180161
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||||||||| |||| || || || || || || |||
Sbjct 180160 TGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTAATGGTC 180101
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| || | |||||| | ||| | |||||||||
Sbjct 180100 TTGCCGGTGAGAGTTTTMACGAAGATTTGCATTTT 180066
>seq6
Length=21059900
Score = 100 bits (110), Expect = 7e-16
Identities = 99/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| | ||| || || || || | ||||| |||| || ||| | ||||||
Sbjct 7471152 AGCACCAAGTGTAAAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGCCCATCC 7471211
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||||||||| | || || || || || |||||||| |||||||||
Sbjct 7471212 TCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCT 7471271
Query 225622 TGGATCTT 225629
||||||||
Sbjct 7471272 TGGATCTT 7471279
Score = 91.5 bits (100), Expect = 4e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 225607 ATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACG 225666
||||| ||||||||||||||||| ||||||| || |||||||| |||| || ||
Sbjct 7471386 ATACCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAGGGCTCAACC 7471445
Query 225667 TCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
|| || ||||| |||||||| |||||||| || | ||| | ||||| ||
Sbjct 7471446 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATATT 7471495
>seq455
Length=926
Score = 93.3 bits (102), Expect = 1e-13
Identities = 80/99 (81%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
||| || || ||||||||||||||||| ||||| ||||| ||||| || ||||| || |
Sbjct 390 TTCTGGGTGGCCAAAAAATCAGAATAAGTGTTGGTAAAGAATAGGGTCCCCTCCCCCAGC 331
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770
||||| ||||| ||||| ||||||| |||||||||
Sbjct 330 CGGATCGAAAAATGAGGTATTTAAATTTCGATCAGTTAA 292
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192408155748782
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |