Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3 145 2e-29 seq2 131 4e-25 seq6 100 7e-16 seq455 93.3 1e-13 >seq3 Length=21835025 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || ||||| || || || || |||| |||||| || | |||||| | |||||| Sbjct 1955069 AGGACCAGATGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAAGTGCGACCATCT 1955010 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || |||||||| || || || || || || ||||| |||||||| ||| Sbjct 1955009 TCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTATCT 1954950 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || || ||||| || || | || || || | ||||| ||| Sbjct 1954949 TGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAGGGTGATGGTC 1954890 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || |||||||||||||| | ||| | |||||||| Sbjct 1954889 TTTCCCGTCAAAGTTTTAACGAAGATCTGCATTTT 1954855 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||| || || || || | ||||||||||| ||| || | |||||||| || ||| Sbjct 1955462 TGAAGAGTAGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGACCATCTTCCAGTTGC 1955403 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| || || || || || || ||||| ||||||||||| || ||||| Sbjct 1955402 TTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGAATCTTA 1955343 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 |||||| || ||||| || || | ||||| || | ||||| |||||||| ||| Sbjct 1955342 GCCTTCACGTTCTCAATGGTATCGGATGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTC 1955283 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | || || | ||| | |||||| Sbjct 1955282 AGGGTCTTCACGAAGATTTGCAT 1955260 >seq2 Length=4222574 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| | |||||| || || || | ||||| |||| | ||| | ||||| Sbjct 180280 AGCACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGATAGAGTGCGTCCATCC 180221 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || || || || || || || || ||||| ||||| Sbjct 180220 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGGATCCCTTCTTTGTCC 180161 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| |||| || || || || || || ||| Sbjct 180160 TGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTAATGGTC 180101 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || | |||||| | ||| | ||||||||| Sbjct 180100 TTGCCGGTGAGAGTTTTMACGAAGATTTGCATTTT 180066 >seq6 Length=21059900 Score = 100 bits (110), Expect = 7e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| | ||| || || || || | ||||| |||| || ||| | |||||| Sbjct 7471152 AGCACCAAGTGTAAAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGCCCATCC 7471211 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| | || || || || || |||||||| ||||||||| Sbjct 7471212 TCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCT 7471271 Query 225622 TGGATCTT 225629 |||||||| Sbjct 7471272 TGGATCTT 7471279 Score = 91.5 bits (100), Expect = 4e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 225607 ATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACG 225666 ||||| ||||||||||||||||| ||||||| || |||||||| |||| || || Sbjct 7471386 ATACCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAGGGCTCAACC 7471445 Query 225667 TCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || ||||| |||||||| |||||||| || | ||| | ||||| || Sbjct 7471446 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATATT 7471495 >seq455 Length=926 Score = 93.3 bits (102), Expect = 1e-13 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || || ||||||||||||||||| ||||| ||||| ||||| || ||||| || | Sbjct 390 TTCTGGGTGGCCAAAAAATCAGAATAAGTGTTGGTAAAGAATAGGGTCCCCTCCCCCAGC 331 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||||| ||||| ||||| ||||||| ||||||||| Sbjct 330 CGGATCGAAAAATGAGGTATTTAAATTTCGATCAGTTAA 292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192408155748782