Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2 648 0.0 seq4 248 1e-60 >seq2 Length=4222574 Score = 648 bits (718), Expect = 0.0 Identities = 1266/1852 (68%), Gaps = 34/1852 (2%) Strand=Plus/Minus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || |||||||| || ||||| ||||| || || || ||||| |||| || ||| Sbjct 4215999 GCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGACCTGCTTTCCACGAATAAAAA 4215940 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 || || ||| | ||| |||| |||| || |||| |||||||| | ||||||||| Sbjct 4215939 TGGATTGATGTTAATTTTCCATAATTAGGTTCAGCTACGTGAATATTGAAAGACTGACTT 4215880 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTT--TTGAGGAATTT 76980 ||||| || || |||||||| |||||||||||||||||| | | || |||| ||| | Sbjct 4215879 TGATCAATAAAGGCTCCTCTGTCAGCCGCCATTTTTATAGTTGATTTAATTGA--AATCT 4215822 Query 76981 CCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAG-GTTTG--TATTTTGAATGG 77037 |||| | ||||| | | | || || | |||| | || ||||||| || | Sbjct 4215821 CCCACACTGTTTTATACAAATCACGAATTTCCTTCGGAATTGATTCAATATTTTGTATTG 4215762 Query 77038 AACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTA 77097 |||||| || |||||| ||| ||| || || || |||| |||||| | || |||| Sbjct 4215761 AACCACGATTTGATATTATTTGATTTTTCATCTCGTCATCCCACAAATCAAGTTCGGTTA 4215702 Query 77098 AAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGT 77157 || | | || | ||| | || |||| ||||||||| || |||||||||| | |||| Sbjct 4215701 AATCACGGAGTAAGTGATGGTTTACTACTTGAAATTCGCCGGACAATACTCGTCTTGTGT 4215642 Query 77158 AAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAG 77217 |||| || ||||| || || | || |||||||| |||| ||||| |||||||| | Sbjct 4215641 AAATGTTTGAAGTATAAGGCTCGAACGACTCATTGTTGCCCATTATTTGTGCAGTAGATG 4215582 Query 77218 CAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGT---GTTCT-GATTTTA 77273 | || ||||| || || || | |||| |||||||| ||||||| | | | |||||| Sbjct 4215581 CTGTAGGCATGGGAGCAACGAGTAAAGAATTTCTGACACCATGTTGCGCTATCGATTTT- 4215523 Query 77274 TCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGT 77333 || ||| | ||| ||||||||||||| || || ||| | ||| || || Sbjct 4215522 ---TTAAGAACATCCCAGTCCCAAAGATCTGTTGGCGATTTATTCCACATATCATACTGC 4215466 Query 77334 AGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCT 77393 | |||||| || || | |||| ||| || ||||| ||||| ||| ||| |||| Sbjct 4215465 AAAATTCCTTTGCTTACTGGACTTCCAACATAAGTCTCATATGGTCCATCTCTTTGAGCT 4215406 Query 77394 AGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGA 77453 | |||||| || ||||||| ||||| || || || ||||||||||||| || ||| | | Sbjct 4215405 AATTCACAGCTGGCTTCCAGAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAAA 4215346 Query 77454 TCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCC 77513 ||| ||| ||| || | | ||| | | | || || || || || || || Sbjct 4215345 AGAAATGCATCATGACTTTCGTAAGAATACCGCATTAATATTAACGCGTCCGCAAACCCT 4215286 Query 77514 TGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGA 77573 || |||||||| |||||||| | || | ||| || ||||||||||||| | ||| Sbjct 4215285 TGGACTCCAATTCCAATAGGACGGTGGCGTAAATTTGATTTTTTAGCTTCTGGCAAAGGG 4215226 Query 77574 TAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTT 77633 || ||||| || || || ||||| || | ||| | ||| | |||| || || || Sbjct 4215225 TAGTAATTTATATCAATTATTTTGTTTAAGTTTTTCGTAACAATTTTAGTTACTTCTTTA 4215166 Query 77634 AGTTTAAGAAAATCAAA---TCTTCCATCTATAACAAACATGTTCAAAGCTATAGATGCT 77690 || || ||| ||| | | || ||| | |||||||| || | || || || || Sbjct 4215165 AGCTTTTTAAAGTCATACGATTTTTCATGCGTCACAAACATATTAAGTGCAATTGACGCC 4215106 Query 77691 AGATTACAAACTGCTACCTCAT-TAGCGTTGGCATATTGTATTATCTCGGTACATAGATT 77749 | |||||| || |||| |||| | | | || ||| | | ||| || || || ||||| Sbjct 4215105 AAATTACACACAGCTATTTCATCTGGTGCTGA-ATACTCAACTATTTCTGTGCACAGATT 4215047 Query 77750 ACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATA 77809 ||| ||||| ||||| || | ||||||||||||||| ||| | || || || |||||| | Sbjct 4215046 ACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACACGAATCCTTAAA 4214987 Query 77810 AAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT 77869 | || | || || || || || | || ||||||||||| | ||| | | Sbjct 4214986 TAACATGTAGGGTGTACCCGTCTCTACTTGAGATTCGATAATGGCAAACCAAAGAGATTG 4214927 Query 77870 AGCTTTTATCA-TAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAA 77928 ||| || || | | |||| | ||| | ||| |||||||| |||| || ||||| Sbjct 4214926 AGCCTTAATAACTCGATTCGC-TCGTCCTTCTTGTTCATATTTGATATAAAGGTTTTCAA 4214868 Query 77929 ATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGT 77988 | || || ||||||||||| | ||||| |||| || ||| ||||| | |||||| | Sbjct 4214867 AATCTTCACCCCAAACATCTGGAAGGCCAGGACATTTATGTGGACACATTAGTGACCAAT 4214808 Query 77989 CACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGAT 78048 | ||| | | ||| ||||||||||| |||||||| ||||| | |||| ||| |||| Sbjct 4214807 CTTCATTGGCTTCAACACGTTTCATAAAAAGATCAGGAATCCACAATGCAAAAAACAGAT 4214748 Query 78049 CTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATAT 78108 | || | | |||||| || ||||| ||||| |||||||| || | ||| || | | || Sbjct 4214747 CGCGCGCCCGATGTTCCTCCTTTCCAGTATTTTTTTTAAGGTCCAAAAATTCGAAGACAT 4214688 Query 78109 CAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGAT 78168 | || ||||| || |||| || || || | ||||||||| |||| ||| ||||||| Sbjct 4214687 CTGAGTGCCAAGGCTCTAAGTAAATAGCAAATGCTCCAGGTCTTTTACCACCGCCCTGAT 4214628 Query 78169 CTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCGTTAGATGTT 78227 | | ||| | || |||||| ||||||| |||||||| | |||| || || || || Sbjct 4214627 CGACATAACGTGCCACATTATTAAAAACTCTTAACATTGGTACTAAT-CCATTTGAAGTA 4214569 Query 78228 CCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATAT----CCC 78283 || || |||||| |||| | |||| | || |||||| | || | || || Sbjct 4214568 CCGTTCGTTCCACAAATTGATGTTCCTTTAGCTCGAATA----CAGTGAACATTCAGTCC 4214513 Query 78284 TATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTC 78343 || || |||||| ||| || || | ||||| | | | || | | || || || Sbjct 4214512 AATGCCACCTGCCGACTTTGAAATCATTGCGCATTGCTCAACTGATTTAAAAATCCCTTC 4214453 Query 78344 TATACTGTCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTC 78402 || ||| || || |||||| ||||| || ||||| ||| || | || Sbjct 4214452 AATTGAATCAGACACTATAGTTAAG-AGAAAGCATGAAGACAATTGTGGACGGTTTGTGG 4214394 Query 78403 CTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATG 78462 ||||| ||| | || || |||||||| ||||| | ||||| || | |||||| | Sbjct 4214393 CTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCAGATAGCAAATTGTAGG 4214334 Query 78463 TTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATAT 78522 |||| | || || || || || ||| || |||| || |||||||| | || || Sbjct 4214333 TTTCCACTGCAGAATCAATATCTTCGCCATGTATACCTATAGCAACACGCATTAGCAAAT 4214274 Query 78523 GCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTT 78582 |||| |||||||| | | || ||||||||| | |||||| || || | || | Sbjct 4214273 GCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAGTAAGACCGCTCAAGTGTCT 4214214 Query 78583 TAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATT 78634 |||| ||||| ||||| ||| ||| || | || || |||||| |||| || Sbjct 4214213 TAAATCCAAAGTAGTTATATCCAAAATCACGATCATATATAATAGCAGAGTT 4214162 >seq4 Length=22154029 Score = 248 bits (274), Expect = 1e-60 Identities = 507/747 (68%), Gaps = 11/747 (1%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||| |||| ||||| ||||||||| || || ||||||||||| ||||||||||| Sbjct 3240309 GACGTAACGCCCATACGTTGATATTCTCCAACTTTCTTCTCGAAAAAGTTAGTTTTGCCA 3240368 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAAT 47954 |||| || || | ||||| || |||||||| | ||| || ||||| || Sbjct 3240369 TCCAGCGAGATCATCTCCATGAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACA 3240428 Query 47955 CCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAA 48014 || | ||| | ||| | ||| || || ||||| |||||| ||||| | ||||| Sbjct 3240429 CCGAGTTCCACCAGCAGACGATCCGCCACAAATTCAATATATTGGGACATCAATGCACAA 3240488 Query 48015 TTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACA 48074 ||||| || || | || || || ||||| || || ||||||||||| || || || ||| Sbjct 3240489 TTCATGCCAATCAAATTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACA 3240548 Query 48075 GCATCC--ACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAA 48132 |||||| || | |||||| ||| ||| || || | | || |||||| | Sbjct 3240549 GCATCCGAGATAATCTCGATGATAC--GCTCCCGGCTGGGCCGTTGCACCAAATGCCGGA 3240606 Query 48133 ACATTA-AACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 |||| | ||| ||||| |||||||| | || || || | || || || || || Sbjct 3240607 ACATCATGACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAG 3240665 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 || || ||||| ||||| || ||||| || || |||||||| || | || || ||| Sbjct 3240666 AACGTCAGACCTGGCATCAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCG 3240725 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCC----GTAACTGGC 48307 ||||| || || || ||||| ||||| ||| ||| |||||| || | | | | Sbjct 3240726 CTGAAGAAGATTCCCTCCACGGCAGCAAACGCGATAATTCTCTCGCCAAAGTTCGCCGCC 3240785 Query 48308 TTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTC 48367 |||| || ||||| | |||||||||||||| ||| ||| ||||||||||| Sbjct 3240786 TTCGATG-AAATCCAAGAGAGCGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTC 3240844 Query 48368 TATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAG 48427 || ||||| || ||| | | ||| | ||| ||| || ||||| || | | Sbjct 3240845 AATGGCATTGAACAGATAATCCCTTTGCTGTGGATCCCTAATATATGTATCGATCAGCAC 3240904 Query 48428 ACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGC 48487 || ||||| || ||||| | ||| || || || || ||||| || || ||||| | || Sbjct 3240905 GCTGTACATCTCCGAGTGCACATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGC 3240964 Query 48488 TTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATC 48547 ||| || || || |||||| | || || || ||| ||||||||| || || ||||| Sbjct 3240965 TTCGGTTATTTGCACCTCCTGGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATC 3241024 Query 48548 ACTAGCAGCAAAAAATGCTAATACATG 48574 || ||||| || || | ||||| Sbjct 3241025 GGAGGCGGCAAAGAAGGCGAGCACATG 3241051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694598872901920