Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2 646 1e-180 seq4 253 3e-62 >seq2 Length=4222574 Score = 646 bits (716), Expect = 1e-180 Identities = 1269/1854 (68%), Gaps = 38/1854 (2%) Strand=Plus/Minus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457 ||||||||||| || ||||| ||||| || || || ||||| |||| || ||| Sbjct 4215999 GCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGACCTGCTTTCCACGAATAAAAA 4215940 Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517 || || ||||| ||| |||| | || || |||| |||||||| | ||||||||| Sbjct 4215939 TGGATTGATGTTAATTTTCCATAATTAGGTTCAGCTACGTGAATATTGAAAGACTGACTT 4215880 Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTT--TTGAGGAATTT 75575 ||||| || || |||||||| |||||||||||||||||| | | || |||| ||| | Sbjct 4215879 TGATCAATAAAGGCTCCTCTGTCAGCCGCCATTTTTATAGTTGATTTAATTGA--AATCT 4215822 Query 75576 CCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA--GATTTG-TATTTTGAATGG 75632 |||| | ||||| | | | || || | |||| |||| ||||||| || | Sbjct 4215821 CCCACACTGTTTTATACAAATCACGAATTTCCTTCGGAATTGATTCAATATTTTGTATTG 4215762 Query 75633 ATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTA 75692 | || | || ||||| ||| ||| || ||||| |||| |||||| | ||||||| Sbjct 4215761 AACCACGATTTGATATTATTTGATTTTTCATCTCGTCATCCCACAAATCAAGTTCGGTTA 4215702 Query 75693 AAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGT 75752 || | | || | ||| | || || | ||||||||| || |||||||||| || |||| Sbjct 4215701 AATCACGGAGTAAGTGATGGTTTACTACTTGAAATTCGCCGGACAATACTCGTCTTGTGT 4215642 Query 75753 AAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAG 75812 |||| || ||||| || || | || |||||||| |||| ||||| ||||| || | Sbjct 4215641 AAATGTTTGAAGTATAAGGCTCGAACGACTCATTGTTGCCCATTATTTGTGCAGTAGATG 4215582 Query 75813 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGT---GTTCT-GATTTTA 75868 | || ||||| || || || | |||| |||||||| ||||||| | | | |||||| Sbjct 4215581 CTGTAGGCATGGGAGCAACGAGTAAAGAATTTCTGACACCATGTTGCGCTATCGATTTT- 4215523 Query 75869 TCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGT 75928 || ||| | ||| ||||||||||||| ||| || ||| | ||| || || Sbjct 4215522 ---TTAAGAACATCCCAGTCCCAAAGATCTGTTGGCGATTTATTCCACATATCATACTGC 4215466 Query 75929 AGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCT 75988 | |||||| ||||| | |||| ||| || || || | || || ||| |||| Sbjct 4215465 AAAATTCCTTTGCTTACTGGACTTCCAACATAAGTCTCATATGGTCCATCTCTTTGAGCT 4215406 Query 75989 AGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT---A 76045 | ||| || || || || | || || || || || ||||||||||||| || ||| | Sbjct 4215405 AATTCACAGCTGGCTTCCAGAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAAA 4215346 Query 76046 AGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGT 76105 ||| | || ||| |||| || ||| ||| | | | || || || || || | Sbjct 4215345 AGAAAT---GCATCATGACTTTCGTAAGAATACCGCATTAATATTAACGCGTCCGCAAAC 4215289 Query 76106 CCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATA 76165 || || |||||||| |||||||| | || | ||| || ||| ||||||||| | | Sbjct 4215288 CCTTGGACTCCAATTCCAATAGGACGGTGGCGTAAATTTGATTTTTTAGCTTCTGGCAAA 4215229 Query 76166 GGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCC 76225 ||||| ||||| ||||| || ||||| || | ||| | ||| | |||| || || Sbjct 4215228 GGGTAGTAATTTATATCAATTATTTTGTTTAAGTTTTTCGTAACAATTTTAGTTACTTCT 4215169 Query 76226 TTTAGTTTGAGAAAATCAAA---TTTTCCATCTATCACAAACATATTAAGAGCTATAGAT 76282 || || || ||| ||| | |||| ||| |||||||||||||||| || || || Sbjct 4215168 TTAAGCTTTTTAAAGTCATACGATTTTTCATGCGTCACAAACATATTAAGTGCAATTGAC 4215109 Query 76283 GCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGA 76342 || | |||||| || |||| |||| | | ||| | | ||| || ||||| ||| Sbjct 4215108 GCCAAATTACACACAGCTATTTCATCTGGTGCTGAATACTCAACTATTTCTGTGCACAGA 4215049 Query 76343 TTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTA 76402 ||||| || || |||||||||| ||||||||||||||| ||| ||||||| || |||||| Sbjct 4215048 TTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACACGAATCCTTA 4214989 Query 76403 TAAAGAACAA--ACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGA 76460 || |||| | || || || || || | || ||||||||||| | ||| | Sbjct 4214988 --AATAACATGTAGGGTGTACCCGTCTCTACTTGAGATTCGATAATGGCAAACCAAAGAG 4214931 Query 76461 CTCTAGCTTTTATTA-TAGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCG- 76518 | ||| || || | | |||| | ||| ||| |||||||| || |||||| | Sbjct 4214930 ATTGAGCCTTAATAACTCGATTCG-CTCGTCCTTCTTGTTCATATT-TG-ATATAAAGGT 4214874 Query 76519 -TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATG 76577 |||||| || || ||||||||||| | |||||||||| || |||||||| | || Sbjct 4214873 TTTCAAAATCTTCACCCCAAACATCTGGAAGGCCAGGACATTTATGTGGACACATTAGTG 4214814 Query 76578 ACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAA 76637 |||| || ||| | | ||| ||||||||||| |||||||| ||||| | |||| || Sbjct 4214813 ACCAATCTTCATTGGCTTCAACACGTTTCATAAAAAGATCAGGAATCCACAATGCAAAAA 4214754 Query 76638 ATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCA 76697 | ||||| || | | | |||| || ||||| ||||| |||||||| || | || || | Sbjct 4214753 ACAGATCGCGCGCCCGATGTTCCTCCTTTCCAGTATTTTTTTTAAGGTCCAAAAATTCGA 4214694 Query 76698 TAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTC 76757 | ||| || ||||| || |||| || || || | | || |||| |||| ||| | Sbjct 4214693 AGACATCTGAGTGCCAAGGCTCTAAGTAAATAGCAAATGCTCCAGGTCTTTTACCACCGC 4214634 Query 76758 CCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGG-AATAATGCCGTTA 76816 ||||||| | ||| | || |||||| ||||||| |||||||| | |||| || || Sbjct 4214633 CCTGATCGACATAACGTGCCACATTATTAAAAACTCTTAACATTGGTACTAAT-CCATTT 4214575 Query 76817 GATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGG 76876 || ||||| || |||||| |||| | |||| || |||||| || | || Sbjct 4214574 GAAGTACCGTTCGTTCCACAAATTGATGTTCCTTTAGCTCGAATACAGTGAACATTCAGT 4214515 Query 76877 CCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCC 76936 || || || |||||| || || || | || || | | | || | | | || || Sbjct 4214514 CCAATGCCACCTGCCGACTTTGAAATCATTGCGCATTGCTCAACTGATTTAAAAATCCCT 4214455 Query 76937 TCTATACTATCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGT 76995 || || |||| || || |||||| ||||| || ||||| ||| || | || Sbjct 4214454 TCAATTGAATCAGACACTATAGTTAAG-AGAAAGCATGAAGACAATTGTGGACGGTTTGT 4214396 Query 76996 TCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTA 77055 ||||| ||| | || || ||||||||||| || | ||||| || | |||||| Sbjct 4214395 GGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCAGATAGCAAATTGTA 4214336 Query 77056 TGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACAT 77115 ||||| | | | || ||||| ||| || |||| ||| |||||||| | || Sbjct 4214335 GGTTTCCACTGCAGAATCAATATCTTCGCCATGTATACCTATAGCAACACGCATTAGCAA 4214276 Query 77116 ATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 77175 |||||| |||| |||| | | || ||||||||| | |||||| || || | || Sbjct 4214275 ATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAGTAAGACCGCTCAAGTGT 4214216 Query 77176 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATT 77229 ||||| ||||| ||||| ||| ||| || | || || |||||| | || || Sbjct 4214215 CTTAAATCCAAAGTAGTTATATCCAAAATCACGATCATATATAATAGCAGAGTT 4214162 >seq4 Length=22154029 Score = 253 bits (280), Expect = 3e-62 Identities = 508/746 (68%), Gaps = 9/746 (1%) Strand=Plus/Plus Query 46324 GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCT 46383 ||| |||| ||||| ||| ||||| || || ||||||||||| ||||||||||| Sbjct 3240309 GACGTAACGCCCATACGTTGATATTCTCCAACTTTCTTCTCGAAAAAGTTAGTTTTGCCA 3240368 Query 46384 TCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAAT 46443 |||| || || | ||||| || || ||||| | ||| || ||||| || Sbjct 3240369 TCCAGCGAGATCATCTCCATGAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACA 3240428 Query 46444 CCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAA 46503 || | ||| | ||| | ||| || || ||||| ||||| ||||| | ||||| Sbjct 3240429 CCGAGTTCCACCAGCAGACGATCCGCCACAAATTCAATATATTGGGACATCAATGCACAA 3240488 Query 46504 TTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACA 46563 ||||| || || | ||||| || ||||| || || ||||||||||| ||||| || ||| Sbjct 3240489 TTCATGCCAATCAAATTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACA 3240548 Query 46564 GCATCC--GATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAA 46621 |||||| |||| | |||||| ||| ||| || || | |||| |||||| | Sbjct 3240549 GCATCCGAGATAATCTCGATGATAC--GCTCCCGGCTGGGCCGTTGCACCAAATGCCGGA 3240606 Query 46622 ACATTA-AACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680 |||| | ||| ||||| |||||||| | ||| || || | || || || || || Sbjct 3240607 ACATCATGACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAG 3240665 Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740 || || || || ||||| || |||||||| || |||||||| || | || || ||| Sbjct 3240666 AACGTCAGACCTGGCATCAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCG 3240725 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA 46800 ||||| || || || || || || || |||| || |||||| || | | || | Sbjct 3240726 CTGAAGAAGATTCCCTCCACGGCAGCAAACGCGATAATTCTCTCGCCAAAGTTCGCCGCC 3240785 Query 46801 TT--ATG-AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCT 46857 || ||| |||||| | ||||||||||||||| ||| ||| ||||||||||| Sbjct 3240786 TTCGATGAAATCCAAGAGAGCGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCA 3240845 Query 46858 ATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGA 46917 || ||||| || ||| | | ||| | ||| ||| ||||||||| || | | Sbjct 3240846 ATGGCATTGAACAGATAATCCCTTTGCTGTGGATCCCTAATATATGTATCGATCAGCACG 3240905 Query 46918 CTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCT 46977 || ||||| || || || | || || || || || ||||| || || ||||| | ||| Sbjct 3240906 CTGTACATCTCCGAGTGCACATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGCT 3240965 Query 46978 TCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCA 47037 || || || || ||||| | || || || || ||||||||| || || ||||| Sbjct 3240966 TCGGTTATTTGCACCTCCTGGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCG 3241025 Query 47038 CTAGCAGCAAAAAATGCCAATACATG 47063 || ||||| || || | ||||| Sbjct 3241026 GAGGCGGCAAAGAAGGCGAGCACATG 3241051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712862634240960