Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq2 646 1e-180
seq4 253 3e-62
>seq2
Length=4222574
Score = 646 bits (716), Expect = 1e-180
Identities = 1269/1854 (68%), Gaps = 38/1854 (2%)
Strand=Plus/Minus
Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457
||||||||||| || ||||| ||||| || || || ||||| |||| || |||
Sbjct 4215999 GCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGACCTGCTTTCCACGAATAAAAA 4215940
Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517
|| || ||||| ||| |||| | || || |||| |||||||| | |||||||||
Sbjct 4215939 TGGATTGATGTTAATTTTCCATAATTAGGTTCAGCTACGTGAATATTGAAAGACTGACTT 4215880
Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTT--TTGAGGAATTT 75575
||||| || || |||||||| |||||||||||||||||| | | || |||| ||| |
Sbjct 4215879 TGATCAATAAAGGCTCCTCTGTCAGCCGCCATTTTTATAGTTGATTTAATTGA--AATCT 4215822
Query 75576 CCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA--GATTTG-TATTTTGAATGG 75632
|||| | ||||| | | | || || | |||| |||| ||||||| || |
Sbjct 4215821 CCCACACTGTTTTATACAAATCACGAATTTCCTTCGGAATTGATTCAATATTTTGTATTG 4215762
Query 75633 ATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTA 75692
| || | || ||||| ||| ||| || ||||| |||| |||||| | |||||||
Sbjct 4215761 AACCACGATTTGATATTATTTGATTTTTCATCTCGTCATCCCACAAATCAAGTTCGGTTA 4215702
Query 75693 AAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGT 75752
|| | | || | ||| | || || | ||||||||| || |||||||||| || ||||
Sbjct 4215701 AATCACGGAGTAAGTGATGGTTTACTACTTGAAATTCGCCGGACAATACTCGTCTTGTGT 4215642
Query 75753 AAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAG 75812
|||| || ||||| || || | || |||||||| |||| ||||| ||||| || |
Sbjct 4215641 AAATGTTTGAAGTATAAGGCTCGAACGACTCATTGTTGCCCATTATTTGTGCAGTAGATG 4215582
Query 75813 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGT---GTTCT-GATTTTA 75868
| || ||||| || || || | |||| |||||||| ||||||| | | | ||||||
Sbjct 4215581 CTGTAGGCATGGGAGCAACGAGTAAAGAATTTCTGACACCATGTTGCGCTATCGATTTT- 4215523
Query 75869 TCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGT 75928
|| ||| | ||| ||||||||||||| ||| || ||| | ||| || ||
Sbjct 4215522 ---TTAAGAACATCCCAGTCCCAAAGATCTGTTGGCGATTTATTCCACATATCATACTGC 4215466
Query 75929 AGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCT 75988
| |||||| ||||| | |||| ||| || || || | || || ||| ||||
Sbjct 4215465 AAAATTCCTTTGCTTACTGGACTTCCAACATAAGTCTCATATGGTCCATCTCTTTGAGCT 4215406
Query 75989 AGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT---A 76045
| ||| || || || || | || || || || || ||||||||||||| || ||| |
Sbjct 4215405 AATTCACAGCTGGCTTCCAGAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAAA 4215346
Query 76046 AGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGT 76105
||| | || ||| |||| || ||| ||| | | | || || || || || |
Sbjct 4215345 AGAAAT---GCATCATGACTTTCGTAAGAATACCGCATTAATATTAACGCGTCCGCAAAC 4215289
Query 76106 CCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATA 76165
|| || |||||||| |||||||| | || | ||| || ||| ||||||||| | |
Sbjct 4215288 CCTTGGACTCCAATTCCAATAGGACGGTGGCGTAAATTTGATTTTTTAGCTTCTGGCAAA 4215229
Query 76166 GGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCC 76225
||||| ||||| ||||| || ||||| || | ||| | ||| | |||| || ||
Sbjct 4215228 GGGTAGTAATTTATATCAATTATTTTGTTTAAGTTTTTCGTAACAATTTTAGTTACTTCT 4215169
Query 76226 TTTAGTTTGAGAAAATCAAA---TTTTCCATCTATCACAAACATATTAAGAGCTATAGAT 76282
|| || || ||| ||| | |||| ||| |||||||||||||||| || || ||
Sbjct 4215168 TTAAGCTTTTTAAAGTCATACGATTTTTCATGCGTCACAAACATATTAAGTGCAATTGAC 4215109
Query 76283 GCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGA 76342
|| | |||||| || |||| |||| | | ||| | | ||| || ||||| |||
Sbjct 4215108 GCCAAATTACACACAGCTATTTCATCTGGTGCTGAATACTCAACTATTTCTGTGCACAGA 4215049
Query 76343 TTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTA 76402
||||| || || |||||||||| ||||||||||||||| ||| ||||||| || ||||||
Sbjct 4215048 TTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACACGAATCCTTA 4214989
Query 76403 TAAAGAACAA--ACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGA 76460
|| |||| | || || || || || | || ||||||||||| | ||| |
Sbjct 4214988 --AATAACATGTAGGGTGTACCCGTCTCTACTTGAGATTCGATAATGGCAAACCAAAGAG 4214931
Query 76461 CTCTAGCTTTTATTA-TAGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCG- 76518
| ||| || || | | |||| | ||| ||| |||||||| || |||||| |
Sbjct 4214930 ATTGAGCCTTAATAACTCGATTCG-CTCGTCCTTCTTGTTCATATT-TG-ATATAAAGGT 4214874
Query 76519 -TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATG 76577
|||||| || || ||||||||||| | |||||||||| || |||||||| | ||
Sbjct 4214873 TTTCAAAATCTTCACCCCAAACATCTGGAAGGCCAGGACATTTATGTGGACACATTAGTG 4214814
Query 76578 ACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAA 76637
|||| || ||| | | ||| ||||||||||| |||||||| ||||| | |||| ||
Sbjct 4214813 ACCAATCTTCATTGGCTTCAACACGTTTCATAAAAAGATCAGGAATCCACAATGCAAAAA 4214754
Query 76638 ATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCA 76697
| ||||| || | | | |||| || ||||| ||||| |||||||| || | || || |
Sbjct 4214753 ACAGATCGCGCGCCCGATGTTCCTCCTTTCCAGTATTTTTTTTAAGGTCCAAAAATTCGA 4214694
Query 76698 TAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTC 76757
| ||| || ||||| || |||| || || || | | || |||| |||| ||| |
Sbjct 4214693 AGACATCTGAGTGCCAAGGCTCTAAGTAAATAGCAAATGCTCCAGGTCTTTTACCACCGC 4214634
Query 76758 CCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGG-AATAATGCCGTTA 76816
||||||| | ||| | || |||||| ||||||| |||||||| | |||| || ||
Sbjct 4214633 CCTGATCGACATAACGTGCCACATTATTAAAAACTCTTAACATTGGTACTAAT-CCATTT 4214575
Query 76817 GATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGG 76876
|| ||||| || |||||| |||| | |||| || |||||| || | ||
Sbjct 4214574 GAAGTACCGTTCGTTCCACAAATTGATGTTCCTTTAGCTCGAATACAGTGAACATTCAGT 4214515
Query 76877 CCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCC 76936
|| || || |||||| || || || | || || | | | || | | | || ||
Sbjct 4214514 CCAATGCCACCTGCCGACTTTGAAATCATTGCGCATTGCTCAACTGATTTAAAAATCCCT 4214455
Query 76937 TCTATACTATCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGT 76995
|| || |||| || || |||||| ||||| || ||||| ||| || | ||
Sbjct 4214454 TCAATTGAATCAGACACTATAGTTAAG-AGAAAGCATGAAGACAATTGTGGACGGTTTGT 4214396
Query 76996 TCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTA 77055
||||| ||| | || || ||||||||||| || | ||||| || | ||||||
Sbjct 4214395 GGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCAGATAGCAAATTGTA 4214336
Query 77056 TGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACAT 77115
||||| | | | || ||||| ||| || |||| ||| |||||||| | ||
Sbjct 4214335 GGTTTCCACTGCAGAATCAATATCTTCGCCATGTATACCTATAGCAACACGCATTAGCAA 4214276
Query 77116 ATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 77175
|||||| |||| |||| | | || ||||||||| | |||||| || || | ||
Sbjct 4214275 ATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAGTAAGACCGCTCAAGTGT 4214216
Query 77176 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATT 77229
||||| ||||| ||||| ||| ||| || | || || |||||| | || ||
Sbjct 4214215 CTTAAATCCAAAGTAGTTATATCCAAAATCACGATCATATATAATAGCAGAGTT 4214162
>seq4
Length=22154029
Score = 253 bits (280), Expect = 3e-62
Identities = 508/746 (68%), Gaps = 9/746 (1%)
Strand=Plus/Plus
Query 46324 GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCT 46383
||| |||| ||||| ||| ||||| || || ||||||||||| |||||||||||
Sbjct 3240309 GACGTAACGCCCATACGTTGATATTCTCCAACTTTCTTCTCGAAAAAGTTAGTTTTGCCA 3240368
Query 46384 TCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAAT 46443
|||| || || | ||||| || || ||||| | ||| || ||||| ||
Sbjct 3240369 TCCAGCGAGATCATCTCCATGAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACA 3240428
Query 46444 CCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAA 46503
|| | ||| | ||| | ||| || || ||||| ||||| ||||| | |||||
Sbjct 3240429 CCGAGTTCCACCAGCAGACGATCCGCCACAAATTCAATATATTGGGACATCAATGCACAA 3240488
Query 46504 TTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACA 46563
||||| || || | ||||| || ||||| || || ||||||||||| ||||| || |||
Sbjct 3240489 TTCATGCCAATCAAATTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACA 3240548
Query 46564 GCATCC--GATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAA 46621
|||||| |||| | |||||| ||| ||| || || | |||| |||||| |
Sbjct 3240549 GCATCCGAGATAATCTCGATGATAC--GCTCCCGGCTGGGCCGTTGCACCAAATGCCGGA 3240606
Query 46622 ACATTA-AACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680
|||| | ||| ||||| |||||||| | ||| || || | || || || || ||
Sbjct 3240607 ACATCATGACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAG 3240665
Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740
|| || || || ||||| || |||||||| || |||||||| || | || || |||
Sbjct 3240666 AACGTCAGACCTGGCATCAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCG 3240725
Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA 46800
||||| || || || || || || || |||| || |||||| || | | || |
Sbjct 3240726 CTGAAGAAGATTCCCTCCACGGCAGCAAACGCGATAATTCTCTCGCCAAAGTTCGCCGCC 3240785
Query 46801 TT--ATG-AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCT 46857
|| ||| |||||| | ||||||||||||||| ||| ||| |||||||||||
Sbjct 3240786 TTCGATGAAATCCAAGAGAGCGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCA 3240845
Query 46858 ATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGA 46917
|| ||||| || ||| | | ||| | ||| ||| ||||||||| || | |
Sbjct 3240846 ATGGCATTGAACAGATAATCCCTTTGCTGTGGATCCCTAATATATGTATCGATCAGCACG 3240905
Query 46918 CTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCT 46977
|| ||||| || || || | || || || || || ||||| || || ||||| | |||
Sbjct 3240906 CTGTACATCTCCGAGTGCACATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGCT 3240965
Query 46978 TCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCA 47037
|| || || || ||||| | || || || || ||||||||| || || |||||
Sbjct 3240966 TCGGTTATTTGCACCTCCTGGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCG 3241025
Query 47038 CTAGCAGCAAAAAATGCCAATACATG 47063
|| ||||| || || | |||||
Sbjct 3241026 GAGGCGGCAAAGAAGGCGAGCACATG 3241051
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712862634240960
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