Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3 174 3e-38 seq2 141 2e-28 seq6 111 3e-19 seq6943 95.1 3e-14 seq3754 95.1 3e-14 seq716 95.1 3e-14 seq4 95.1 3e-14 >seq3 Length=21835025 Score = 174 bits (192), Expect = 3e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || |||||||| | || || || ||||| |||||||||| Sbjct 1955085 ACCACCACGCAGACGGAGGACCAGATGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGA 1955026 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||||| ||||| || ||||| || ||||| ||||||| ||| || || || || Sbjct 1955025 CAAAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 1954966 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| ||||| ||||| || || ||| | || || || || |||| || || Sbjct 1954965 AATGCCTTCCTTATCTTGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAAC 1954906 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||| ||||| ||||||||||| |||||||| ||||||||||| Sbjct 1954905 CTCCAGGGTGATGGTCTTTCCCGTCAAAGTTTTAACGAAGATCTGCATTTT 1954855 Score = 134 bits (148), Expect = 3e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931 ||||||||||| || || |||| ||| | || || || || || ||||| || | | Sbjct 1955486 CCACCACGCAGACGTAGAACCAAATGAAGAGTAGACTCCTTCTGAATATTGTAATCGGAC 1955427 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| ||||| || ||||| || ||||| ||||||| ||| || || || || Sbjct 1955426 AAG-GTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 1955368 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| || ||||| || || ||| | || || || || || | || || Sbjct 1955367 AATGCCTTCCTTGTCCTGAATCTTAGCCTTCACGTTCTCAATGGTATCGGATGGCTCCAC 1955308 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || |||| ||||| ||||| || ||||| Sbjct 1955307 CTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 1955260 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 12445420 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 12445364 >seq2 Length=4222574 Score = 141 bits (156), Expect = 2e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || || | || || ||| || || || ||||||||||| | Sbjct 180295 CCACCACGCAGACGGAGCACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGAT 180236 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| || || || ||||||||||||| ||| || || || || Sbjct 180235 AGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGG 180176 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || ||||| |||||||| || || || | ||||| ||||| || | ||||| Sbjct 180175 ATCCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 180116 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || | || || ||||| || || | ||| || ||||| || |||||||| Sbjct 180115 TCCAAGGTAATGGTCTTGCCGGTGAGAGTTTTMACGAAGATTTGCATTTT 180066 Score = 86.0 bits (94), Expect = 1e-11 Identities = 167/243 (69%), Gaps = 14/243 (6%) Strand=Plus/Plus Query 44149 TTCAATCACGAAAGTCC-CAACAGAGGTCATCAGTTCGTGACTCGTAAAATCACGAAAGC 44207 ||||||||||| ||||| | || | || | | || ||||| || ||||| || | Sbjct 1458433 TTCAATCACGAGAGTCCGCGAC-GTGGCGAAAACTTTGTGACACGCAAAATTACCCGTTC 1458491 Query 44208 GGTTGCGAATATTTTCAACGGGACAGAAAAATGCATGTAT------CTAGGAAACATAGA 44261 ||| || || ||||| | || ||||| | |||| ||||| ||| | || Sbjct 1458492 GGTAGCAAAAATTTT-----GCTCAATCAAATGGA-GTATTTTGAGCTAGGCAACTTGGA 1458545 Query 44262 CTCTAAAAGAGATTGGGGATATGCCTTGGATTATGTAGAAGCCATGTGGCTGATGTTGCA 44321 ||| ||| | ||||||||| ||||| || ||||| || ||||||||| ||||| |||| Sbjct 1458546 CTCGAAACGCGATTGGGGACATGCCAGCGACTATGTGGAGGCCATGTGGATGATGCTGCA 1458605 Query 44322 ACAAGACAGGTCAGACGACTACGTTATTGCAACTGGAAAGACGACGAGTGTCCGTGACTT 44381 | |||| | | | || || || ||||||||||| | ||| || || ||||| || Sbjct 1458606 GCGTGACACGCCTGCAGATTATGTGATTGCAACTGGTGAAACGCACAGCGTGCGTGAATT 1458665 Query 44382 TGT 44384 || Sbjct 1458666 CGT 1458668 >seq6 Length=21059900 Score = 111 bits (122), Expect = 3e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || |||| ||||| || || || || ||||||||||| | Sbjct 7471137 CCTCCACGTAGACGGAGCACCAAGTGTAAAGTAGACTCCTTCTGAATGTTGTAGTCGGAC 7471196 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| || || || || || ||||||||||| || || || ||| Sbjct 7471197 AGAGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGA 7471256 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTT 283021 ||||||||||||||||||||||| || || Sbjct 7471257 ATACCCTCCTTGTCTTGGATCTTGGCCTT 7471285 Score = 100 bits (110), Expect = 6e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||||||||||||||| || || || | || || |||||||| | || || Sbjct 7471386 ATACCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAGGGCTCAACC 7471445 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || | ||||| ||||| || ||||||||||| ||||| |||||||| || Sbjct 7471446 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATATT 7471495 >seq6943 Length=1146 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 740 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 684 >seq3754 Length=1718 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1009 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 953 Score = 91.5 bits (100), Expect = 3e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 687 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCC 741 >seq716 Length=1004 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 262 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 318 >seq4 Length=22154029 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 17509665 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 17509721 Score = 91.5 bits (100), Expect = 3e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| Sbjct 17510028 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCACGA 17510085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046631198430662