Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq3 174 3e-38
seq2 141 2e-28
seq6 111 3e-19
seq6943 95.1 3e-14
seq3754 95.1 3e-14
seq716 95.1 3e-14
seq4 95.1 3e-14
>seq3
Length=21835025
Score = 174 bits (192), Expect = 3e-38
Identities = 177/231 (77%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||||||||| || || |||||||| | || || || ||||| ||||||||||
Sbjct 1955085 ACCACCACGCAGACGGAGGACCAGATGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGA 1955026
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| ||||| ||||| || ||||| || ||||| ||||||| ||| || || || ||
Sbjct 1955025 CAAAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 1954966
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || ||||| ||||| ||||| || || ||| | || || || || |||| || ||
Sbjct 1954965 AATGCCTTCCTTATCTTGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAAC 1954906
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| || ||||| ||||| ||||||||||| |||||||| |||||||||||
Sbjct 1954905 CTCCAGGGTGATGGTCTTTCCCGTCAAAGTTTTAACGAAGATCTGCATTTT 1954855
Score = 134 bits (148), Expect = 3e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931
||||||||||| || || |||| ||| | || || || || || ||||| || | |
Sbjct 1955486 CCACCACGCAGACGTAGAACCAAATGAAGAGTAGACTCCTTCTGAATATTGTAATCGGAC 1955427
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| ||||| ||||| || ||||| || ||||| ||||||| ||| || || || ||
Sbjct 1955426 AAG-GTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 1955368
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || |||||||| || ||||| || || ||| | || || || || || | || ||
Sbjct 1955367 AATGCCTTCCTTGTCCTGAATCTTAGCCTTCACGTTCTCAATGGTATCGGATGGCTCCAC 1955308
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| |||||||| ||||| || |||| ||||| ||||| || |||||
Sbjct 1955307 CTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 1955260
Score = 95.1 bits (104), Expect = 3e-14
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 12445420 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 12445364
>seq2
Length=4222574
Score = 141 bits (156), Expect = 2e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||||||||| || || || | || || ||| || || || ||||||||||| |
Sbjct 180295 CCACCACGCAGACGGAGCACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGAT 180236
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| ||||| |||||||| || || || ||||||||||||| ||| || || || ||
Sbjct 180235 AGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGG 180176
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| || || ||||| |||||||| || || || | ||||| ||||| || | |||||
Sbjct 180175 ATCCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 180116
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| | || || ||||| || || | ||| || ||||| || ||||||||
Sbjct 180115 TCCAAGGTAATGGTCTTGCCGGTGAGAGTTTTMACGAAGATTTGCATTTT 180066
Score = 86.0 bits (94), Expect = 1e-11
Identities = 167/243 (69%), Gaps = 14/243 (6%)
Strand=Plus/Plus
Query 44149 TTCAATCACGAAAGTCC-CAACAGAGGTCATCAGTTCGTGACTCGTAAAATCACGAAAGC 44207
||||||||||| ||||| | || | || | | || ||||| || ||||| || |
Sbjct 1458433 TTCAATCACGAGAGTCCGCGAC-GTGGCGAAAACTTTGTGACACGCAAAATTACCCGTTC 1458491
Query 44208 GGTTGCGAATATTTTCAACGGGACAGAAAAATGCATGTAT------CTAGGAAACATAGA 44261
||| || || ||||| | || ||||| | |||| ||||| ||| | ||
Sbjct 1458492 GGTAGCAAAAATTTT-----GCTCAATCAAATGGA-GTATTTTGAGCTAGGCAACTTGGA 1458545
Query 44262 CTCTAAAAGAGATTGGGGATATGCCTTGGATTATGTAGAAGCCATGTGGCTGATGTTGCA 44321
||| ||| | ||||||||| ||||| || ||||| || ||||||||| ||||| ||||
Sbjct 1458546 CTCGAAACGCGATTGGGGACATGCCAGCGACTATGTGGAGGCCATGTGGATGATGCTGCA 1458605
Query 44322 ACAAGACAGGTCAGACGACTACGTTATTGCAACTGGAAAGACGACGAGTGTCCGTGACTT 44381
| |||| | | | || || || ||||||||||| | ||| || || ||||| ||
Sbjct 1458606 GCGTGACACGCCTGCAGATTATGTGATTGCAACTGGTGAAACGCACAGCGTGCGTGAATT 1458665
Query 44382 TGT 44384
||
Sbjct 1458666 CGT 1458668
>seq6
Length=21059900
Score = 111 bits (122), Expect = 3e-19
Identities = 114/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| ||||| || || || |||| ||||| || || || || ||||||||||| |
Sbjct 7471137 CCTCCACGTAGACGGAGCACCAAGTGTAAAGTAGACTCCTTCTGAATGTTGTAGTCGGAC 7471196
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| ||||| |||||||| || || || || || ||||||||||| || || || |||
Sbjct 7471197 AGAGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGA 7471256
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTT 283021
||||||||||||||||||||||| || ||
Sbjct 7471257 ATACCCTCCTTGTCTTGGATCTTGGCCTT 7471285
Score = 100 bits (110), Expect = 6e-16
Identities = 88/110 (80%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
||||||||||||||||||||||| || || || | || || |||||||| | || ||
Sbjct 7471386 ATACCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAGGGCTCAACC 7471445
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| | ||||| ||||| || ||||||||||| ||||| |||||||| ||
Sbjct 7471446 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATATT 7471495
>seq6943
Length=1146
Score = 95.1 bits (104), Expect = 3e-14
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 740 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 684
>seq3754
Length=1718
Score = 95.1 bits (104), Expect = 3e-14
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1009 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 953
Score = 91.5 bits (100), Expect = 3e-13
Identities = 53/55 (96%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 687 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCC 741
>seq716
Length=1004
Score = 95.1 bits (104), Expect = 3e-14
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 262 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 318
>seq4
Length=22154029
Score = 95.1 bits (104), Expect = 3e-14
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 17509665 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 17509721
Score = 91.5 bits (100), Expect = 3e-13
Identities = 55/58 (95%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 17510028 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCACGA 17510085
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046631198430662
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |