Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq2 156 1e-32
seq3 134 3e-26
>seq2
Length=4222574
Score = 156 bits (172), Expect = 1e-32
Identities = 160/209 (77%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| |||| ||||| ||||||||||| || || || || ||| | ||||| ||
Sbjct 180066 AAAATGC---AAATCTTCGTKAAAACTCTCACCGGCAAGACCATTACCTTGGAGGTCGAG 180122
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
||| |||||||||||||| ||||| ||||| |||||||||||||| ||||| ||
Sbjct 180123 CCCTCTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGGATCCCACCA 180182
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094
|| ||||| || || ||||| ||||| || ||||| || |||||| | ||||| ||||
Sbjct 180183 GATCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGACGCACTCTATCCGAC 180242
Query 178095 TATAACGTCCAAAAAGAATCAACACTGCA 178123
|| ||| | || || || || || ||||
Sbjct 180243 TACAACATTCAGAAGGAGTCCACTTTGCA 180271
>seq3
Length=21835025
Score = 134 bits (148), Expect = 3e-26
Identities = 156/208 (75%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| |||||||| || || || || || || ||||| || |||||||| || ||
Sbjct 1955263 CAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCATCCGAT 1955322
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| |||||||| || |||||||||||||| ||||| || || || || |||||
Sbjct 1955323 ACCATTGAGAACGTGAAGGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAGCAG 1955382
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| || ||||||||||| || || || |||||||| | || |||| ||||||| || |
Sbjct 1955383 CGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCAC-CTTGTCCGATTACAATAT 1955441
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTT 178130
|| || || || || || ||| | |||
Sbjct 1955442 TCAGAAGGAGTCTACTCTTCATTTGGTT 1955469
Score = 129 bits (142), Expect = 1e-24
Identities = 158/215 (73%), Gaps = 3/215 (1%)
Strand=Plus/Plus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | || ||||| |||||| | || ||||| || |||||||| ||||| ||
Sbjct 1954855 AAAATGC---AGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCCTGGAGGTTGAG 1954911
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
|| || ||||| ||||||||||| |||||||| || || ||||| || || ||
Sbjct 1954912 CCTTCCGATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAAGGCATTCCCCCA 1954971
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094
|| ||||| || || ||||||||||| || || || |||||||| | ||| | | ||
Sbjct 1954972 GATCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTTTGTCTGAC 1955031
Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
|| || |||| || || || || || ||||| ||
Sbjct 1955032 TACAATATCCAGAAGGAGTCGACCCTCCATCTGGT 1955066
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203607000143282
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |