Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2 156 1e-32 seq3 134 3e-26 >seq2 Length=4222574 Score = 156 bits (172), Expect = 1e-32 Identities = 160/209 (77%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| ||||| ||||||||||| || || || || ||| | ||||| || Sbjct 180066 AAAATGC---AAATCTTCGTKAAAACTCTCACCGGCAAGACCATTACCTTGGAGGTCGAG 180122 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| |||||||||||||| ||||| ||||| |||||||||||||| ||||| || Sbjct 180123 CCCTCTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGGATCCCACCA 180182 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || || ||||| ||||| || ||||| || |||||| | ||||| |||| Sbjct 180183 GATCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGACGCACTCTATCCGAC 180242 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCA 178123 || ||| | || || || || || |||| Sbjct 180243 TACAACATTCAGAAGGAGTCCACTTTGCA 180271 >seq3 Length=21835025 Score = 134 bits (148), Expect = 3e-26 Identities = 156/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || || || || || || ||||| || |||||||| || || Sbjct 1955263 CAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCATCCGAT 1955322 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || |||||||||||||| ||||| || || || || ||||| Sbjct 1955323 ACCATTGAGAACGTGAAGGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAGCAG 1955382 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || || ||||||||||| || || || |||||||| | || |||| ||||||| || | Sbjct 1955383 CGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCAC-CTTGTCCGATTACAATAT 1955441 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || ||| | ||| Sbjct 1955442 TCAGAAGGAGTCTACTCTTCATTTGGTT 1955469 Score = 129 bits (142), Expect = 1e-24 Identities = 158/215 (73%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||| |||||| | || ||||| || |||||||| ||||| || Sbjct 1954855 AAAATGC---AGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCCTGGAGGTTGAG 1954911 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || ||||| ||||||||||| |||||||| || || ||||| || || || Sbjct 1954912 CCTTCCGATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAAGGCATTCCCCCA 1954971 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || || ||||||||||| || || || |||||||| | ||| | | || Sbjct 1954972 GATCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTTTGTCTGAC 1955031 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || || |||| || || || || || ||||| || Sbjct 1955032 TACAATATCCAGAAGGAGTCGACCCTCCATCTGGT 1955066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203607000143282