Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3 131 2e-25 seq6 109 5e-19 seq2 105 6e-18 >seq3 Length=21835025 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||||| |||| ||| || || |||||||||||| || || ||||| Sbjct 1955487 GCCACCACGCAGACGTAGAACCAAATGAAGAGTAGACTCCTTCTGAATATTGTAATCGGA 1955428 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| | || || || |||||||||||||| ||||| ||||| || || | ||| Sbjct 1955427 CAAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 1955368 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 || || ||||||||| ||| | || | ||||| | | || ||| | ||||| Sbjct 1955367 AATGCCTTCCTTGTCC-TGAATCTTAGCCTTCACGTTCTCAATGGTATCGGATGGCTCCA 1955309 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || || || ||||| ||||| ||||| || ||||| Sbjct 1955308 CCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 1955260 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||||| || || ||||||||| || || ||||| || Sbjct 1955084 CCACCACGCAGACGGAGGACCAGATGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAC 1955025 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || || |||||||||||||| ||||| ||||| || || | |||| Sbjct 1955024 AAAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1954965 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814 | || ||||| | | ||| | || || | ||| | | || ||| | ||| || Sbjct 1954964 ATGCCTTCCTTAT-CTTGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAAC 1954906 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| || || || || ||||||| || || ||||| |||||||| || Sbjct 1954905 CTCCAGGGTGATGGTCTTTCCCGTCAAAGTTTTAACGAAGATCTGCATTTT 1954855 >seq6 Length=21059900 Score = 109 bits (120), Expect = 5e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || |||||||| | ||||| || | || ||||||||||||||| |||||||| Sbjct 7471136 GCCTCCACGTAGACGGAGCACCAAGTGTAAAGTAGACTCCTTCTGAATGTTGTAGTCGGA 7471195 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || |||||| | || || ||||||||||| ||||| |||| ||||| || || | ||| Sbjct 7471196 CAGAGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGG 7471255 Query 41755 AACGCTCTCCTTGTC 41769 || | ||||||||| Sbjct 7471256 AATACCCTCCTTGTC 7471270 >seq2 Length=4222574 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||| | |||| ||| ||||||||||||||| |||||||| Sbjct 180296 GCCACCACGCAGACGGAGCACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGA 180237 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGG 41753 || ||||| | || || |||||||||||||| || ||||| ||||| || || | || Sbjct 180236 TAGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGG 180177 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 || | || || |||||| ||| || ||| | | | ||||| | ||| | Sbjct 180176 GATCCCT-TCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGA 180118 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||| || || || || || || || || || ||||| || ||||| || Sbjct 180117 CCTCCAAGGTAATGGTCTTGCCGGTGAGAGTTTTMACGAAGATTTGCATTTT 180066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462257463323600