Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq111 134 1e-26 seq252 102 8e-17 >seq111 Length=362587 Score = 134 bits (148), Expect = 1e-26 Identities = 477/740 (64%), Gaps = 14/740 (2%) Strand=Plus/Plus Query 16661 ACAACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCT 16720 || || ||||| | ||||| ||| ||| ||| || || ||||| || || || || Sbjct 244357 ACGACTCCCATGCGCTGGTACTCGGCAACCTTTTTCTCAAAGAAGTTTGTCTTTCCGTCC 244416 Query 16721 AGAGATATATTCTCCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCC 16780 ||||| || | ||||||||| || ||||| ||| | || ||| || Sbjct 244417 AGAGAGATCATATCCATGAAACTGAAGGGATTCTTAGTGTTGTAGATCTTACCCACACCG 244476 Query 16781 AGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTC 16840 || || | | | ||| || |||||||| || || ||| |||| | |||||||| Sbjct 244477 AGCTCCATCAGCAGACGATCGGCGACAAATTCAATGTACTGGGACATGAGGACGCAGTTC 244536 Query 16841 ATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCT 16900 || || || | | || || ||||| || | || |||||| || | || || Sbjct 244537 ATGCCAATCAAATTGCAGGGCAGGGCTTCGGTGAGGAACTCTTGCTCGATTTCGACAGCA 244596 Query 16901 TCCTTAATAATACTAGCAACTCGTTCC----TCGGACGGTGTATGTTTAAGATGTTTAAA 16956 ||| |||| || | || || ||| | ||||| || | ||||| | | Sbjct 244597 TCCCTAATGATCTCAATAATGCGCTCCCGCTTGGGACGCTGCACC----AGATGCTGGTA 244652 Query 16957 CATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAA 17016 ||| || || || ||||| || | || ||||| | ||| || ||||| || || Sbjct 244653 CATGAGCACCGCAAAGTCGCAGTGGAGACCTTCGTCACGAGAGATCAGCTCGTTGGAGAA 244712 Query 17017 TGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGA 17076 |||| |||||||| || || ||||| | |||||| |||| ||| || || Sbjct 244713 GGTCAGACCGGGCATGAGGCCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCT 244772 Query 17077 AAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTT 17136 ||||| || || || |||| |||||| || || | || ||||| | | || ||| Sbjct 244773 GAAGAAGATTCCTTCCACGGCTGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTT 244832 Query 17137 GTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATC--CATCGTTTC 17193 | || ||||| | | |||| || || || |||||| || | ||| || || Sbjct 244833 CG-AGGATATCCAGGACAGGGCCCAGTCTGCCTTGCGCTTTA--CAGCCGGCATGGTCTC 244889 Query 17194 TATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAG 17253 | || || || || | || |||| | || ||| || || || ||||| | Sbjct 244890 AACAGCATTGAACAAGTAGTCGCGCTCCTTCGGCTCCCGTATGTAGGTGTCAATGAGCAC 244949 Query 17254 GCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGC 17313 ||||||||| |||||||| | |||||||||||| ||||| || ||||| ||||| || || Sbjct 244950 GCTGTACATCTCGGAGTGCACGTTCTCCATGGCAATCTGGAAGCCGTAGAAGCAACGCGC 245009 Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373 |||| || || || ||| ||| || || | ||||| ||||| || ||||| || Sbjct 245010 CTCCGTGATCTGCACCTCCTGACTGAAGCGCTCGACCAGATTCTCGTTAACAATGCCATC 245069 Query 17374 GCTCGCGGCGAAAAACGCCA 17393 | || ||||| || |||| Sbjct 245070 GGAGGCAGCGAAGAAGGCCA 245089 >seq252 Length=176535 Score = 102 bits (112), Expect = 8e-17 Identities = 188/268 (70%), Gaps = 6/268 (2%) Strand=Plus/Minus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842 ||||| || || |||||||| || | | ||| |||||||| | ||||||| | ||| Sbjct 30022 TTCATGTAGCGAATCTTTCCAAATATCGCACGCTCCTTCCAGCCCATGTCGTGTATGCCC 29963 Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATTT 119901 | | || ||| | ||| ||||| || ||||||||||| || |||| ||| ||| || Sbjct 29962 CCAATGGACCACATGCAGCCCACATAGCCGTTGGGATCGCGCCCGTCTAGACT-GTACTT 29904 Query 119902 ATCGTTTAAGTAG-ATACAG-ACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGT 119959 ||| || || || || || || | | ||| ||| || || | |||| || ||| Sbjct 29903 GTCG-TTGAGCAGAATCGAGTACTC-GAGCGCCTGTTCCGGCGTGGCCGTCCACTCGAGT 29846 Query 119960 AtttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGA 120019 || || || ||||||||||| || | |||| ||||| || || || || |||| ||| Sbjct 29845 ATCTTCTTGGCCCAGTACATGCGCAGAAATCCGTGCATCTTGCCCTCTCGCACCAGTTGC 29786 Query 120020 AGTTGTGCGGCGTTCCATAAGGGATCGT 120047 || || || | |||||| | | ||||| Sbjct 29785 AGCTGGGCCGAGTTCCACAGGTCATCGT 29758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517533081865800