Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq111 134 1e-26
seq252 102 8e-17
>seq111
Length=362587
Score = 134 bits (148), Expect = 1e-26
Identities = 477/740 (64%), Gaps = 14/740 (2%)
Strand=Plus/Plus
Query 16661 ACAACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCT 16720
|| || ||||| | ||||| ||| ||| ||| || || ||||| || || || ||
Sbjct 244357 ACGACTCCCATGCGCTGGTACTCGGCAACCTTTTTCTCAAAGAAGTTTGTCTTTCCGTCC 244416
Query 16721 AGAGATATATTCTCCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCC 16780
||||| || | ||||||||| || ||||| ||| | || ||| ||
Sbjct 244417 AGAGAGATCATATCCATGAAACTGAAGGGATTCTTAGTGTTGTAGATCTTACCCACACCG 244476
Query 16781 AGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTC 16840
|| || | | | ||| || |||||||| || || ||| |||| | ||||||||
Sbjct 244477 AGCTCCATCAGCAGACGATCGGCGACAAATTCAATGTACTGGGACATGAGGACGCAGTTC 244536
Query 16841 ATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCT 16900
|| || || | | || || ||||| || | || |||||| || | || ||
Sbjct 244537 ATGCCAATCAAATTGCAGGGCAGGGCTTCGGTGAGGAACTCTTGCTCGATTTCGACAGCA 244596
Query 16901 TCCTTAATAATACTAGCAACTCGTTCC----TCGGACGGTGTATGTTTAAGATGTTTAAA 16956
||| |||| || | || || ||| | ||||| || | ||||| | |
Sbjct 244597 TCCCTAATGATCTCAATAATGCGCTCCCGCTTGGGACGCTGCACC----AGATGCTGGTA 244652
Query 16957 CATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAA 17016
||| || || || ||||| || | || ||||| | ||| || ||||| || ||
Sbjct 244653 CATGAGCACCGCAAAGTCGCAGTGGAGACCTTCGTCACGAGAGATCAGCTCGTTGGAGAA 244712
Query 17017 TGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGA 17076
|||| |||||||| || || ||||| | |||||| |||| ||| || ||
Sbjct 244713 GGTCAGACCGGGCATGAGGCCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCT 244772
Query 17077 AAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTT 17136
||||| || || || |||| |||||| || || | || ||||| | | || |||
Sbjct 244773 GAAGAAGATTCCTTCCACGGCTGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTT 244832
Query 17137 GTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATC--CATCGTTTC 17193
| || ||||| | | |||| || || || |||||| || | ||| || ||
Sbjct 244833 CG-AGGATATCCAGGACAGGGCCCAGTCTGCCTTGCGCTTTA--CAGCCGGCATGGTCTC 244889
Query 17194 TATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAG 17253
| || || || || | || |||| | || ||| || || || ||||| |
Sbjct 244890 AACAGCATTGAACAAGTAGTCGCGCTCCTTCGGCTCCCGTATGTAGGTGTCAATGAGCAC 244949
Query 17254 GCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGC 17313
||||||||| |||||||| | |||||||||||| ||||| || ||||| ||||| || ||
Sbjct 244950 GCTGTACATCTCGGAGTGCACGTTCTCCATGGCAATCTGGAAGCCGTAGAAGCAACGCGC 245009
Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373
|||| || || || ||| ||| || || | ||||| ||||| || ||||| ||
Sbjct 245010 CTCCGTGATCTGCACCTCCTGACTGAAGCGCTCGACCAGATTCTCGTTAACAATGCCATC 245069
Query 17374 GCTCGCGGCGAAAAACGCCA 17393
| || ||||| || ||||
Sbjct 245070 GGAGGCAGCGAAGAAGGCCA 245089
>seq252
Length=176535
Score = 102 bits (112), Expect = 8e-17
Identities = 188/268 (70%), Gaps = 6/268 (2%)
Strand=Plus/Minus
Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842
||||| || || |||||||| || | | ||| |||||||| | ||||||| | |||
Sbjct 30022 TTCATGTAGCGAATCTTTCCAAATATCGCACGCTCCTTCCAGCCCATGTCGTGTATGCCC 29963
Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATTT 119901
| | || ||| | ||| ||||| || ||||||||||| || |||| ||| ||| ||
Sbjct 29962 CCAATGGACCACATGCAGCCCACATAGCCGTTGGGATCGCGCCCGTCTAGACT-GTACTT 29904
Query 119902 ATCGTTTAAGTAG-ATACAG-ACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGT 119959
||| || || || || || || | | ||| ||| || || | |||| || |||
Sbjct 29903 GTCG-TTGAGCAGAATCGAGTACTC-GAGCGCCTGTTCCGGCGTGGCCGTCCACTCGAGT 29846
Query 119960 AtttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGA 120019
|| || || ||||||||||| || | |||| ||||| || || || || |||| |||
Sbjct 29845 ATCTTCTTGGCCCAGTACATGCGCAGAAATCCGTGCATCTTGCCCTCTCGCACCAGTTGC 29786
Query 120020 AGTTGTGCGGCGTTCCATAAGGGATCGT 120047
|| || || | |||||| | | |||||
Sbjct 29785 AGCTGGGCCGAGTTCCACAGGTCATCGT 29758
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517533081865800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |