Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq252 105 7e-18 >seq252 Length=176535 Score = 105 bits (116), Expect = 7e-18 Identities = 189/268 (71%), Gaps = 6/268 (2%) Strand=Plus/Minus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995 |||||||| || ||||||||||||| | |||||||||||| | ||||||| | || Sbjct 30022 TTCATGTAGCGAATCTTTCCAAATATCGCACGCTCCTTCCAGCCCATGTCGTGTATGCCC 29963 Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACTT 119054 | | | ||| | || ||||| || ||||||||||| ||||||| ||| |||||| Sbjct 29962 CCAATGGACCACATGCAGCCCACATAGCCGTTGGGATCGCGCCCGTCTAGACT-GTACTT 29904 Query 119055 ATCGTTTAAGTAG-ATACAG-ACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGT 119112 ||| || || || || || || | | ||| |||||| || |||| || ||| Sbjct 29903 GTCG-TTGAGCAGAATCGAGTACTC-GAGCGCCTGTTCCGGCGTGGCCGTCCACTCGAGT 29846 Query 119113 AtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGA 119172 || || || ||||||||||| || | | | |||||||| || ||||| | || || Sbjct 29845 ATCTTCTTGGCCCAGTACATGCGCAGAAATCCGTGCATCTTGCCCTCTCGCACCAGTTGC 29786 Query 119173 AGTTGTGCGGTGTTCCATAGAGGATCGT 119200 || || || | |||||| || ||||| Sbjct 29785 AGCTGGGCCGAGTTCCACAGGTCATCGT 29758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511402030164200