Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq252 105 7e-18
>seq252
Length=176535
Score = 105 bits (116), Expect = 7e-18
Identities = 189/268 (71%), Gaps = 6/268 (2%)
Strand=Plus/Minus
Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995
|||||||| || ||||||||||||| | |||||||||||| | ||||||| | ||
Sbjct 30022 TTCATGTAGCGAATCTTTCCAAATATCGCACGCTCCTTCCAGCCCATGTCGTGTATGCCC 29963
Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACTT 119054
| | | ||| | || ||||| || ||||||||||| ||||||| ||| ||||||
Sbjct 29962 CCAATGGACCACATGCAGCCCACATAGCCGTTGGGATCGCGCCCGTCTAGACT-GTACTT 29904
Query 119055 ATCGTTTAAGTAG-ATACAG-ACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGT 119112
||| || || || || || || | | ||| |||||| || |||| || |||
Sbjct 29903 GTCG-TTGAGCAGAATCGAGTACTC-GAGCGCCTGTTCCGGCGTGGCCGTCCACTCGAGT 29846
Query 119113 AtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGA 119172
|| || || ||||||||||| || | | | |||||||| || ||||| | || ||
Sbjct 29845 ATCTTCTTGGCCCAGTACATGCGCAGAAATCCGTGCATCTTGCCCTCTCGCACCAGTTGC 29786
Query 119173 AGTTGTGCGGTGTTCCATAGAGGATCGT 119200
|| || || | |||||| || |||||
Sbjct 29785 AGCTGGGCCGAGTTCCACAGGTCATCGT 29758
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511402030164200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |