Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq328 560 1e-154
seq111 132 6e-26
>seq328
Length=165906
Score = 560 bits (620), Expect = 1e-154
Identities = 1262/1879 (67%), Gaps = 28/1879 (1%)
Strand=Plus/Minus
Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858
||||| | ||| ||||| || | | || || ||||| || |||| ||| ||||||||
Sbjct 107408 TTGTCGACTGTAAATTGTATTGCATTGGCAGCTGGTTTTGTGCGTAAATAATACATTCCG 107349
Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918
|||||||| || |||| | ||||||| || ||| | ||| || | ||
Sbjct 107348 GTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTAGGC 107289
Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978
|| || | ||| | ||| | || ||||||||||| || || || || || || ||||||
Sbjct 107288 TCGGCCACATGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCC 107229
Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 53037
|| || || | | || || ||||||||| | |||||||||| |||| || ||
Sbjct 107228 ATCTTAATTGTGGATTTAACTGAAATTTCCCACACTGTTTTATAAAGATCGCG-AACATT 107170
Query 53038 TTCTGGAAG-GTTTG--TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGAT 53094
|| |||| |||| |||| ||||| || || | | | || || |||| || ||
Sbjct 107169 TTGGGGAATAGTTTCAATATTTTGAATGGAGCCCCTACTTGAAATTATTTTATTTTTCAT 107110
Query 53095 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 53154
||||||| |||||| | ||| |||||| | || | | ||| |||| || |||||
Sbjct 107109 ATCATCATCCCATAAGTCCAACTCTGTTAAATCCCTTAATAAATGATGATTGACCACTTG 107050
Query 53155 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 53214
|||||| ||||| ||||||| | || || |||||| | ||||| ||||| | || ||
Sbjct 107049 AAATTCACCAGATAATACTCGTCTCGTATATATATTAGTTGTATATGGTTCGAATGATTC 106990
Query 53215 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 53274
||||| |||| |||||| ||||| ||||| || |||||||| || || || || |||
Sbjct 106989 GTTATTACCCATAATTTGGGCAGTAGATGCTGTAGGCATAGGAGCTACTAACAACGAATT 106930
Query 53275 TCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGG 53334
|||| |||| | || | || | ||||| || || ||||| ||| | | || ||
Sbjct 106929 CCTAATTCCGTGTTTTTTAATGTCTTCTTTCAGGTTTTGCCAATCCCATAAGTTCGTTGG 106870
Query 53335 TACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATG 53393
||||||||| || || || | | || |||| ||| |
Sbjct 106869 AGTTTTATCCCACATATCATATTGTAGAATGCCATTGCTTACAGGACT-TCCTTTATAGG 106811
Query 53394 TATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAA 53453
| ||||| || || | | || ||||||||||| || ||||| || || ||||||
Sbjct 106810 TTTCGTACGGACCAAATATTTGAGAAAGTTCACAACTAGCTTCTAAAGCCCCAAAATAAA 106751
Query 53454 TGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTA 53513
| ||||| || || | | |||| | ||||| || ||| | ||| || |
Sbjct 106750 TAGTTTCAAATATTTGTTGGTTTAAAAGACTAGCTTCTTCACTTTCATAGGGAAAACGCA 106691
Query 53514 AGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 53573
||||| || ||||| || || ||||||||||| ||||| || || | ||| || ||
Sbjct 106690 TTAGAATTAAAGCGTCAGCGAAACCTTGAACACCTATACCAATTGGACGATGCCTTAAAT 106631
Query 53574 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTC 53633
| || | | ||||||||| | || ||||| || || ||||| |||||||| || |||
Sbjct 106630 TGGATTTCTTAGCTTCTGGCAAGGGGTAATAGTTGATGTCTATTATTTTATTAAGATTTT 106571
Query 53634 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTA---TTA 53690
| ||| |||| ||||| || | ||| ||||||||| | ||| |||
Sbjct 106570 TAGCAACAGTTTTGGTTACATCTTTTAATTTTTTGAAATCAAATGTTTTTTCTGGTGTTA 106511
Query 53691 CAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 53750
|||||||||| | |||||| || || | ||| ||||| || | ||||| || | | |
Sbjct 106510 CAAACATGTTAAGTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATCAGGTGCAGAGT 106451
Query 53751 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 53810
| | | || || || || | |||||| || || || || || | |||||||||||| |
Sbjct 106450 ACTCAACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGATTGC 106391
Query 53811 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATT 53870
||||| | ||||| | ||||||| |||| ||| |||| |||||||||||| || ||||
Sbjct 106390 TCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCAACTTGCGATT 106331
Query 53871 CTATAATCGCTTTCCA-GACGACACGAGCCTTTA-TTATAGATTTGTATCTCTTTTCTCT 53928
||||||| || ||| ||||| |||| || | | | ||| || | | | ||||
Sbjct 106330 CTATAATGGCAAACCATAACGAC-TGAGCTTTCACTGTTCGAT---TAGCACGTCCCTCT 106275
Query 53929 T--TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 53986
| || ||| ||| | | | ||||| | || |||||||||| | | |||||||
Sbjct 106274 TGCTCATATTTGACATAAAGTTGCTCAAATTTTTCGCCCCAAACATCTTGAAGTCCAGGA 106215
Query 53987 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAG 54045
|||| || ||||||||||||||||| | | | | | |||| || |||||||| || ||
Sbjct 106214 CATTTATGTGGACACATCAACGACCAGTTTTCAT-TTGCTTCAACCCGTTTCATGAAAAG 106156
Query 54046 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 54105
||| |||||||| | ||| ||| ||||| | | || | ||| || ||||| || ||
Sbjct 106155 ATCGGGAATCCATAAAGCATAAAAAAGATCCCGTGCTCGGTTTTCTTCTTTTCCAGTGTT 106096
Query 54106 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCAT 54165
|||| || || | || | | || ||| |||||||| || || || || || | |
Sbjct 106095 TCTTTTGAGGTCTAAAAATTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAAA 106036
Query 54166 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 54225
| ||||| | ||| ||||||||||| | |||| || |||||| | |||||
Sbjct 106035 GGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGTGCCACATTATTAAATACTCT 105976
Query 54226 CAACATTGGAA-TAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGG 54284
| |||||||| |||| ||||| || | ||| || || || | || | | || |||
Sbjct 105975 TAGCATTGGAACTAAT-CCATTTGAAGTACCGTTCGTTCCACATATGGAAGTGCCTTTGG 105917
Query 54285 CACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATC 54344
|||||||| | || || || || || || || ||| || || | ||| |||
Sbjct 105916 CACGAATACAATGAACATTAAGTCCAATTCCACCCGCTGATTTGGAAATCATTGCACATT 105857
Query 54345 GTTTTAACGTATCATAGATGCCCTCTATACTATC---ATCCATCATGTTAAGTAGAAAAC 54401
||| | | | | | || || || || ||| || ||| ||| || |||||||
Sbjct 105856 GTTCAACTGATTTAAAAATACCTTCAATTGAATCCGAATTCAT--TGTCAA-AAGAAAAC 105800
Query 54402 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 54461
| || | ||| | ||| | || | ||| ||| | || || || || |||||||
Sbjct 105799 ATGAGGATAGTTGAGGGCGATTTGTAGCAGCAGCAAAAAGAGTTGGCGAGGCATGCGTAA 105740
Query 54462 ACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAA 54521
| || || |||||||| ||||| || || | ||||| | ||||| | |||||
Sbjct 105739 AATATCGCTCTGAAAGTAGGTTGTAAGTTTCAACAGCTGCACCAATATCGTCTCCATGAA 105680
Query 54522 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 54581
| || | ||||| ||||||| |||||| || || | || | || || |||||||
Sbjct 105679 TACCAAGAGCGACGCGCATTAGCATGTGTTGTGGACGCTCTGCAATTTTCCCATTTATTT 105620
Query 54582 TCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 54641
| || || ||||| || | || ||||| ||||||||||| || || || || |
Sbjct 105619 TAAGTAAATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCGAAATCACGAT 105560
Query 54642 CGTAAATAATAACTGAGTT 54660
| ||||||||| | |||||
Sbjct 105559 CATAAATAATAGCAGAGTT 105541
>seq111
Length=362587
Score = 132 bits (146), Expect = 6e-26
Identities = 287/427 (67%), Gaps = 3/427 (1%)
Strand=Plus/Plus
Query 24138 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 24197
|| || |||||||| ||||| ||||| | | || | |||||||| || || || |||
Sbjct 244663 GCAAAGTCGCAGTGGAGACCTTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCG 244722
Query 24198 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 24257
||||| ||||||||||| || |||||||| || || ||||| || ||||| |||
Sbjct 244723 GGCATGAGGCCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTGAAGAAGATT 244782
Query 24258 CCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG-CGCTGTCATG--TATC 24314
||||| || || ||||||||||||| | || || | || || | || | ||||
Sbjct 244783 CCTTCCACGGCTGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATATC 244842
Query 24315 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 24374
|| | ||||| || ||||| |||||| ||||| ||||| | |||||| ||
Sbjct 244843 CAGGACAGGGCCCAGTCTGCCTTGCGCTTTACAGCCGGCATGGTCTCAACAGCATTGAAC 244902
Query 24375 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 24434
| |||| || || || | || || ||||| | | || ||||| ||
Sbjct 244903 AAGTAGTCGCGCTCCTTCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCG 244962
Query 24435 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 24494
|| || | ||| || ||||| || || || |||||||| || | ||||| || |||||
Sbjct 244963 GAGTGCACGTTCTCCATGGCAATCTGGAAGCCGTAGAAGCAACGCGCCTCCGTGATCTGC 245022
Query 24495 ACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 24554
|| || || || || || | | ||| || || || || || || ||| || ||
Sbjct 245023 ACCTCCTGACTGAAGCGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCAGCGAAG 245082
Query 24555 AACGCCA 24561
|| ||||
Sbjct 245083 AAGGCCA 245089
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593707239358800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |