Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq162 136 5e-27 >seq162 Length=246154 Score = 136 bits (150), Expect = 5e-27 Identities = 444/683 (65%), Gaps = 34/683 (5%) Strand=Plus/Minus Query 145606 AAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCTGGGAAAGGGCCGGGGGCTC 145665 || || || |||| ||| ||| | | ||| | ||| | ||||| || || || | Sbjct 68266 AATTCTTCAATGTTCTCGACCTTTCGCTTGATTTTCAGCTTTGGAAACGGTCGTGGCTTG 68207 Query 145666 CTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAG 145724 | | || ||||| ||| || || || || ||||| || || || || | ||| |||| Sbjct 68206 C-GTTCTAGCTGCTCCTTTAGTGGATCAACATGGTTAAGATACACATGAGTGTCGCCCAT 68148 Query 145725 GACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAG 145784 | ||||| || || || | || | |||||| | || || | ||||| ||| ||||| Sbjct 68147 GGTGTGGACAAAATCGCCCGTCTTCAAGCCCGTTACATGTGCAATCATGTGGGTGAGCAG 68088 Query 145785 GGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAG 145844 || ||| ||| |||||||||||||| ||||| |||||||| | ||||| ||||| Sbjct 68087 GGCATAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCGCTGATACAG 68028 Query 145845 CTGGCAGGAGAGCTCCCCGC------CCGCCACGTAGAACTG-GCACAGGAGGTGGCAGG 145897 ||||||||||||||| || | | |||||||| || ||| ||| |||||||| Sbjct 68027 CTGGCAGGAGAGCTCTCCTCGAGTTTGAGAGACGTAGAATTGTGCA-AGGCAGTGGCAGG 67969 Query 145898 GCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGC 145957 | || | ||||| || | |||| || |||||||||| | | || | | | Sbjct 67968 GGGGTAATGCCATTTTTGGTATGTCCAGGGGATTCCAGGCGGACATAATGA---TGCGAC 67912 Query 145958 TCTCG---GGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCC 146014 ||| || || | |||| || || | | | | |||||| | |||| | Sbjct 67911 GATCGGATGGATTATCCCTGATGGTCCTAATTACCTGGCGCAACTGGTCGATTCCCTTGC 67852 Query 146015 CCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGT 146074 | | ||| || | | || | ||| |||| || ||||| | |||||| || || | Sbjct 67851 CGCTGTAGTCATCGTCGCAGGTGCCATACTCGGCACCAAAGTGTCGCCACTGAAAGCCAT 67792 Query 146075 AGACGGGCCCCAGGTCCC------CGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGA 146128 |||| || ||||| || | || | ||| |||| ||||| | | | || | Sbjct 67791 AGACAGGACCCAGATCTCCCACGGCGCGGTCCGTGTGGCCCAG------CTTGTCTAGAA 67738 Query 146129 AGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGC---GGAGAGCTCATTGG 146185 | || | || | |||| | ||||| || | ||| | |||| ||||| || | Sbjct 67737 ACTCTCTGGTGCTGTTGCCATCCCAAATGTGCACGTTCTTCGCCTGCAAGAGC---TTCG 67681 Query 146186 AGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCC 146245 || || || | ||||| |||||||| || | |||| ||| |||| |||| Sbjct 67680 CATCTGTCTTTCCGGCCACAAACCATAGCAGCTCCTCCACGACCGCCCGAAAGAACACCC 67621 Query 146246 TCTTGGTGGTCAGCAGGGGGAAC 146268 |||||||||||||||||| ||| Sbjct 67620 GCTTGGTGGTCAGCAGGGGAAAC 67598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590062527517400