Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq6 131 1e-25
seq51 127 2e-24
seq23 116 3e-21
seq35 114 1e-20
seq13 86.0 5e-12
>seq6
Length=3104374
Score = 131 bits (144), Expect = 1e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | |||||||| |||| || |||||||| || ||||| ||||| | |
Sbjct 2898480 CCACCACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2898421
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || | ||||||||||| ||||| || | || || | |||||| || |||
Sbjct 2898420 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 2898361
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| || || | ||| || ||| ||||||
Sbjct 2898360 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 2898301
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178
|||| ||| ||||||||||| || | ||||| ||||| |||||||||||
Sbjct 2898300 TCCAAGGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAAATTTGCATTTT 2898251
>seq51
Length=625475
Score = 127 bits (140), Expect = 2e-24
Identities = 230/333 (69%), Gaps = 5/333 (2%)
Strand=Plus/Minus
Query 23617 CCAATGATGCCGCAGCCCAGCCGGCCGCCAGAATTGCCCGTGGTCTTGCTGAGCGGGTGC 23676
||||||| |||||||| | ||| |||| | |||||| ||||||||||| ||| |||
Sbjct 71582 CCAATGACACCGCAGCCAATACGGGCGCCGGCATTGCCGGTGGTCTTGCTCAGCTCGTGG 71523
Query 23677 TCGCCGAGGCCCAGGTCATCGCGGTCCGTGTGCACGACCAGGCTGCGGCCCAATATACTC 23736
| || ||||| |||||| || | ||| ||||||| | |||| || | || ||
Sbjct 71522 CCACCCTTGCCCAAGTCATCAGCATCGGCGTGGACGACCACGGTGCGTCCAATGATGCTG 71463
Query 23737 AACGGC-CCAAACAGGGTTATCACGTTGTCGCTCATGTGTATGGCCGTGAGTGCGGTGCA 23795
|||| || || || || ||| |||| | ||| | |||||| | | ||
Sbjct 71462 T-CGGCACCGAAAAGAGTGATCTTTGAGTCGGTGATGCTGACAGCCGTGGG---GCTGTC 71407
Query 23796 GCCCGCAGAGCGCACGTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGCGCC 23855
||| || | | | |||||||| |||||| | ||| || | | || || ||| || ||
Sbjct 71406 GCCGGCCGCCTGAATGTTGCCCAAGTCGCCCAAGTGGCGGTTCTCGTCGGTGGGGGCACC 71347
Query 23856 GTGTCTCTGGCGGGTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTC 23915
||| || || | ||| || ||||| ||| | ||| ||||||||||| || ||||
Sbjct 71346 GTGCTCCTTGCTGCGGGGATTGAAGTGGGGGCCGGACGACATGCAGCCGTTGGTGTTGTC 71287
Query 23916 GCCGAATTCGTGCACGTGAAAACCGTGCAGCCC 23948
|||||| |||||||| || || || ||||| ||
Sbjct 71286 GCCGAACTCGTGCACATGGAATCCATGCAGTCC 71254
>seq23
Length=1278451
Score = 116 bits (128), Expect = 3e-21
Identities = 157/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| ||| | |||||||||||| || ||||| ||||| | || || || | |||
Sbjct 1264106 AGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCC 1264165
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||| ||||| || | || || | ||||||||| ||| | || ||||||||
Sbjct 1264166 TCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCC 1264225
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| ||||| | | | || || ||||| |||| ||| |||||
Sbjct 1264226 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAAGGTGATGGTT 1264285
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAAT 21182
||||| || || ||||| ||||| || ||||||||| ||
Sbjct 1264286 TTGCCAGTCAAGGTTTTCACAAAGATCTGCATTTTGTAT 1264324
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| ||| | |||||||||||| || ||||| ||||| | || || || | |||
Sbjct 1263422 AGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCC 1263481
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||| ||||| || | || || | ||||||||| ||| | || ||||||||
Sbjct 1263482 TCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCC 1263541
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| ||||| | | | || || ||||| |||| ||| |||||
Sbjct 1263542 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTT 1263601
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||||||| | || || ||||| || |||||
Sbjct 1263602 TTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263633
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| ||| | |||||||||||| || ||||| ||||| | || || || | |||
Sbjct 1263650 AGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCC 1263709
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||| ||||| || | || || | ||||||||| ||| | || ||||||||
Sbjct 1263710 TCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCC 1263769
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| ||||| | | | || || ||||| |||| ||| |||||
Sbjct 1263770 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTT 1263829
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||||||| | || || ||||| || |||||
Sbjct 1263830 TTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263861
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| ||| | |||||||||||| || ||||| ||||| | || || || | |||
Sbjct 1263878 AGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCC 1263937
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||| ||||| || | || || | ||||||||| ||| | || ||||||||
Sbjct 1263938 TCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCC 1263997
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| ||||| | | | || || ||||| |||| ||| |||||
Sbjct 1263998 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTT 1264057
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||||||| | || || ||||| || |||||
Sbjct 1264058 TTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1264089
Score = 102 bits (112), Expect = 7e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006
|||| || || || | ||||||| ||| | ||| |||||||| || ||||| ||||| |
Sbjct 1263177 TTCCACCGCGGAGACGCAGCACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAG 1263236
Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066
|| || || | ||||||||||| ||||| || | || || | ||||||||| ||
Sbjct 1263237 AAAGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGG 1263296
Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126
| | || |||||||| |||||| ||||| | | | || || |||||
Sbjct 1263297 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAA 1263356
Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| ||| ||||| |||||||| | || || ||||| || |||||
Sbjct 1263357 CCTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263405
>seq35
Length=832945
Score = 114 bits (126), Expect = 1e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | |||||||| ||||||||| |||||||| || ||||| ||||| | |
Sbjct 774107 CCACCGCGCAGGCGGAGCACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 774166
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| || | ||||||||||||| ||||| || |||| | | |||||| || |||
Sbjct 774167 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGA 774226
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| || || | ||| || || ||||||
Sbjct 774227 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACC 774286
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179
|| | ||| ||||||||||| || | || || || || || ||||| |||
Sbjct 774287 TCGAGGGTTATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGTTG 774337
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | |||||||| ||||||||| |||||||| || ||||| ||||| | |
Sbjct 773651 CCACCGCGCAGGCGGAGCACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 773710
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| || | ||||||||||||| ||||| || |||| | | |||||| || |||
Sbjct 773711 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGA 773770
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| || || | ||| || || ||||||
Sbjct 773771 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACC 773830
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| ||||||||||| || | || || || || || |||||
Sbjct 773831 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 773877
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | |||||||| ||||||||| |||||||| || ||||| ||||| | |
Sbjct 773879 CCACCGCGCAGGCGGAGCACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 773938
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| || | ||||||||||||| ||||| || |||| | | |||||| || |||
Sbjct 773939 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGA 773998
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| || || | ||| || || ||||||
Sbjct 773999 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACC 774058
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| ||||||||||| || | || || || || || |||||
Sbjct 774059 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 774105
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026
|||| ||||||||| |||||||| || ||||| ||||| | || || | ||||||||
Sbjct 773441 ACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCC 773500
Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086
||||| ||||| ||| | || | | |||||| || ||| | ||| |||||||| |
Sbjct 773501 AGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 773560
Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146
||||| || || | ||| || || |||||| |||| ||| |||||||||
Sbjct 773561 ATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTCTTG 773620
Query 21147 CCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| || | || || || || || |||||
Sbjct 773621 CCAGTCAGGGTCTTCACGAAGATCTGCAT 773649
>seq13
Length=1606494
Score = 86.0 bits (94), Expect = 5e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 38729 GGCGGCGTGGGGCTGAACCTGACCGGCGGCAACCACATCATCATGCTGGAGCCGCACTGG 38788
||||| || ||||| ||||||| | | ||||||| | | || |||| |||||||
Sbjct 1471827 GGCGGTGTTGGGCTCAACCTGAATGTGGCCAACCACTTGCTGCTGGTGGACTTGCACTGG 1471886
Query 38789 AACCCGCAAATTGAGCTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAGAAAAAGCGC 38848
||||||||| | |||| |||||||| || |||||| ||||| |||||| | |||| |
Sbjct 1471887 AACCCGCAACTGGAGCGACAGGCGCAGGATCGCATCTACCGCTACGGCCAGCAGAAGCCC 1471946
Query 38849 AC 38850
||
Sbjct 1471947 AC 1471948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422249241940460
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