Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq111 439 3e-118 seq6 159 4e-34 seq23 149 6e-31 seq35 132 5e-26 seq51 125 7e-24 >seq111 Length=362587 Score = 439 bits (486), Expect = 3e-118 Identities = 549/745 (74%), Gaps = 6/745 (1%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 ||||||| || || |||||||| || || |||||||| || || |||||| ||| |||| Sbjct 245194 AGGCCGAAGCCTCCTTCTGGACTGTGGAAGAGGTGGATCTATCGAAGGACGCGACAGACT 245135 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 ||| || ||| ||||||||||||| | |||||| |||||||||||||| ||||| | Sbjct 245134 GGGCCCGTCTGACCGACAACGAGCGCTACTTCATCTCCCACGTGCTGGCCTTCTTCGCTG 245075 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834 || ||| ||||| || |||||||||||||||||||| ||| ||||||||||||| | Sbjct 245074 CCTCCGATGGCATTGTTAACGAGAATCTGGTCGAGCGCTTCAGTCAGGAGGTGCAGATCA 245015 Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894 | |||||||| |||||||||||||| ||||| |||||||||||||||||||| || |||| Sbjct 245014 CGGAGGCGCGTTGCTTCTACGGCTTCCAGATTGCCATGGAGAACGTGCACTCCGAGATGT 244955 Query 116895 ATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACG 116954 | ||||| ||||| ||| | || || ||||| | ||||| || | Sbjct 244954 ACAGCGTGCTCATTGACACCTACATACGGGAGCCGAAGGAGCGCGACTACTTGTTCAATG 244895 Query 116955 CCATCGAGACGATGCCGTGCGTCAAAGAG-AAGGCCGAGTGGGCGCTGCGCTGGATCGCC 117013 | | ||||| |||||| || |||| | ||||| || ||||| ||| |||||| || Sbjct 244894 CTGTTGAGACCATGCCG-GCTGTAAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATATCC 244836 Query 117014 GGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTC 117073 | | |||| ||| | |||||| | | ||||| || ||||| || || ||||| Sbjct 244835 TCGAAATCGGCCAACTTTGCCGAGCGTATTATTGCCTTTGCAGCCGTGGAAGGAATCTTC 244776 Query 117074 TTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTG 117133 || ||||| || ||| | || |||||||| ||||| || |||||||||||||| ||| Sbjct 244775 TTCAGCGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGCCTCATGCCCGGTCTG 244716 Query 117134 ACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTG 117193 || ||| ||||||||| ||||| | ||||| ||||| || ||||||||||| | Sbjct 244715 ACCTTCTCCAACGAGCTGATCTCTCGTGACGAAGGTCTCCACTGCGACTTTGCGGTGCTC 244656 Query 117194 CTGTTCAAGCATTTGGTGCAGCG-ACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGA 117252 ||| | ||||| |||||||||| || |||| || |||| | | |||||| | | || Sbjct 244655 ATGTACCAGCATCTGGTGCAGCGTCCCAAGCG-GGAGCGCATTATTGAGATCATTAGGGA 244597 Query 117253 CGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGC-GTCTGCTGGGAC 117311 || |||| |||||||| |||||||||||||| ||||| ||| | || | || Sbjct 244596 TGCTGTCGAAATCGAGCAAGAGTTCCTCACCGAAGCCCTGCC-CTGCAATTTGATTGGCA 244538 Query 117312 TCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGC 117371 | || |||| ||||| || ||||| || || |||||||| | |||||| | |||| Sbjct 244537 TGAACTGCGTCCTCATGTCCCAGTACATTGAATTTGTCGCCGATCGTCTGCTGATGGAGC 244478 Query 117372 TGGTCGGCGCCAAGCACTACAACAC 117396 | | | | ||| ||||||||| Sbjct 244477 TCGGTGTGGGTAAGATCTACAACAC 244453 >seq6 Length=3104374 Score = 159 bits (176), Expect = 4e-34 Identities = 180/240 (75%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 40677 AACGCTCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGA 40736 |||| |||||||| ||||||| || || ||||| ||||| ||||| ||||||||| | || Sbjct 2898242 AACGATCCGAAAA-TGCAAATTTTTGTGAAAACTCTCACTGGCAAGACCATCACCTTGGA 2898300 Query 40737 CGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCAT 40796 ||||| || | |||| | | | | |||||| || || | ||||| |||||||| Sbjct 2898301 GGTCGAGCCCTCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCAT 2898360 Query 40797 CCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCT 40856 ||| | || ||||| || || |||| ||| ||||| |||||||| || | ||||| || Sbjct 2898361 TCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCT 2898420 Query 40857 CAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||||||||| | || ||||| | ||| | ||| || | || || Sbjct 2898421 GTCCGACTACAACATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGTGGTGG 2898480 >seq23 Length=1278451 Score = 149 bits (164), Expect = 6e-31 Identities = 168/220 (76%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || ||||| | || ||||||||||||||| | || || || ||| Sbjct 1264320 AAAATGCAGATCTTTGTGAAAACCTTGACTGGCAAAACCATCACCTTGGAGGTTGA-GCC 1264262 Query 40747 A-CCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | |||||| | | | |||| | |||| || || | ||||| ||||| |||||| | | Sbjct 1264261 ATCCGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAG 1264203 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| || ||||||| ||| ||||| |||||||| || | || || || |||| Sbjct 1264202 ACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGACT 1264143 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||||||| |||| || ||| | ||| |||| Sbjct 1264142 ACAACATCCAGAAGGAGTCCACTCTCCATTTGGTGCTGCG 1264103 Score = 143 bits (158), Expect = 3e-29 Identities = 165/217 (76%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || || || || || || || ||||||||||||||| | || || || |||| | Sbjct 1263633 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAAACCATCACCCTGGAGGTTGA-GCCATC 1263575 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | | |||| | |||| || || | ||||| ||||| |||||| | |||| Sbjct 1263574 CGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACC 1263516 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || ||||||| ||| ||||| |||||||| || | || || || ||||||| Sbjct 1263515 AGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGACTACA 1263456 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||||| |||| || ||| | ||| |||| Sbjct 1263455 ACATCCAGAAGGAGTCCACTCTCCATTTGGTGCTGCG 1263419 Score = 143 bits (158), Expect = 3e-29 Identities = 165/217 (76%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || || || || || || || ||||||||||||||| | || || || |||| | Sbjct 1263861 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAAACCATCACCCTGGAGGTTGA-GCCATC 1263803 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | | |||| | |||| || || | ||||| ||||| |||||| | |||| Sbjct 1263802 CGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACC 1263744 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || ||||||| ||| ||||| |||||||| || | || || || ||||||| Sbjct 1263743 AGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGACTACA 1263684 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||||| |||| || ||| | ||| |||| Sbjct 1263683 ACATCCAGAAGGAGTCCACTCTCCATTTGGTGCTGCG 1263647 Score = 143 bits (158), Expect = 3e-29 Identities = 165/217 (76%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || || || || || || || ||||||||||||||| | || || || |||| | Sbjct 1264089 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAAACCATCACCCTGGAGGTTGA-GCCATC 1264031 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | | |||| | |||| || || | ||||| ||||| |||||| | |||| Sbjct 1264030 CGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACC 1263972 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || ||||||| ||| ||||| |||||||| || | || || || ||||||| Sbjct 1263971 AGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGACTACA 1263912 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||||| |||| || ||| | ||| |||| Sbjct 1263911 ACATCCAGAAGGAGTCCACTCTCCATTTGGTGCTGCG 1263875 Score = 138 bits (152), Expect = 1e-27 Identities = 164/217 (76%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || || || || || || || ||||||||||||||| | || || || |||| | Sbjct 1263405 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAAACCATCACCCTGGAGGTTGA-GCCATC 1263347 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | | |||| | |||| || || | ||||| ||||| |||||| | |||| Sbjct 1263346 CGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACC 1263288 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || ||||||| ||| ||||| |||||||| || | || || || ||||||| Sbjct 1263287 AGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGACTACA 1263228 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||||| | || || ||| | ||| |||| Sbjct 1263227 ACATCCAGAAGGAGTCTACTCTCCATTTGGTGCTGCG 1263191 >seq35 Length=832945 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| |||| ||||| || | Sbjct 773877 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 773818 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| |||||||| ||| | || ||| Sbjct 773817 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 773758 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | ||| ||||| |||||||| |||| || || | |||||||||| Sbjct 773757 CAGCGTTTGATTTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAAC 773698 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | || ||||| | ||| | ||| || | || ||| Sbjct 773697 ATCCAGAAGGAGTCGACTTTGCATTTGGTGCTCCGCCTGCGCGGTGGC 773650 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| |||| ||||| || | Sbjct 774105 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 774046 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| |||||||| ||| | || ||| Sbjct 774045 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 773986 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | ||| ||||| |||||||| |||| || || | |||||||||| Sbjct 773985 CAGCGTTTGATTTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAAC 773926 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | || ||||| | ||| | ||| || | || ||| Sbjct 773925 ATCCAGAAGGAGTCGACTTTGCATTTGGTGCTCCGCCTGCGCGGTGGC 773878 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || || ||||| ||||| ||| |||| ||||| || Sbjct 774336 AACATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATAACCCTCGAGGTCGAGCCC 774277 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | ||||| |||||||| ||| | || Sbjct 774276 TCGGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGAT 774217 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || | || | ||| ||||| |||||||| |||| || || | ||||||| Sbjct 774216 CAGCAGCGTTTGATTTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTAC 774157 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||| | || ||||| | ||| | ||| || | || ||| Sbjct 774156 AACATCCAGAAGGAGTCGACTTTGCATTTGGTGCTCCGCCTGCGCGGTGGC 774106 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || ||||| || | Sbjct 773649 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGCCCTCG 773590 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| |||||||| ||| | || ||| Sbjct 773589 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 773530 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || ||||| |||||||| |||| || || | |||||||||| Sbjct 773529 CAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAAC 773470 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || ||||| | || ||||| Sbjct 773469 ATCCAGAAGGAGTCGACTTTGCATTTGGTATTGCG 773435 >seq51 Length=625475 Score = 125 bits (138), Expect = 7e-24 Identities = 242/354 (68%), Gaps = 5/354 (1%) Strand=Plus/Plus Query 139355 GTGCTCGGCCTGCCGCGCGGCCTGCACGGCTTCCACGTGCACGAGTTCGGCGACGCGAGC 139414 ||||| ||||| | || ||||| || ||||| |||||||||||||||||| | | Sbjct 71236 GTGCTGGGCCTTACCAAGGGACTGCATGGATTCCATGTGCACGAGTTCGGCGACAACACC 71295 Query 139415 AACGGGTGCACGTCGGCCGGCGAGCACTTCAA-CCCCGCGCGCCGGGACCACGGCGCGCC 139473 ||||| |||| |||| ||||| |||||||| |||||| || ||| ||||| || || Sbjct 71296 AACGGCTGCATGTCGTCCGGCCCCCACTTCAATCCCCGC-AGCAAGGAGCACGGTGCCCC 71354 Query 139474 CGACGCCGAGATCAGGCACGTCGGCGACCTGGGCAACCTCGAGTCGGCGGGCCGCGACGC 139533 | || ||||| | | ||| | |||||| |||||||| | | ||||| | ||||| Sbjct 71355 CACCGACGAGAACCGCCACTTGGGCGACTTGGGCAACATTCA---GGCGGCCGGCGACAG 71411 Query 139534 GCTCACCGAGGTGAGCCTGACGGACGGCGTCGTGTCCCTGTACGGTCCGCACAGCATCAT 139593 | ||| | || ||| | || ||| | | || | |||| | |||||||||| Sbjct 71412 CCCCACGGCTGTCAGCATCACCGACTCAAAGATCACTCTTTTCGGTGCCGACAGCATCAT 71471 Query 139594 CGGACGGAGTCTGGTCGTGCACACGGACAGGGACGATCTGGGCCTCACCGACCATCCATT 139653 ||||| | ||||||| ||| | || || || ||||| | ||| | Sbjct 71472 TGGACGCACCGTGGTCGTCCACGCCGATGCTGATGACTTGGGCAAGGGTGGCCACGAGCT 71531 Query 139654 GAGCAAGACCACCGGCAACTCGGGCGGCCGGCTCGCGTGCGGCATCATCGGGAT 139707 |||||||||||||||||| | |||| ||| | | ||||| |||| || || Sbjct 71532 GAGCAAGACCACCGGCAATGCCGGCGCCCGTATTGGCTGCGGTGTCATTGGCAT 71585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515206738135600