Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq6 149 5e-31 seq23 134 1e-26 seq35 129 5e-25 seq51 95.1 1e-14 >seq6 Length=3104374 Score = 149 bits (164), Expect = 5e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || || |||||||| ||| || |||||| |||||| Sbjct 2898463 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTC 2898404 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| |||| |||||||||||||| || || |||||||||||||| Sbjct 2898403 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 2898344 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||| | | ||||||||| | ||| | || || Sbjct 2898343 GATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTT 2898284 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || |||||||| |||||||| ||||| Sbjct 2898283 GCCAGTGAGAGTTTTCACAAAAATTTGCAT 2898254 >seq23 Length=1278451 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || |||||| |||| |||||||| || || |||||||| || Sbjct 1263179 CCACCGCGGAGACGCAGCACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAA 1263238 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || |||||| ||||| || || ||| |||||||||||||||| || || || Sbjct 1263239 AGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 1263298 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||||||||| || || || || | || | |||||| | ||| ||| Sbjct 1263299 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACC 1263358 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||||||||||||||| || ||||| |||||||| Sbjct 1263359 TCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263405 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | | || |||||| |||| || ||||| || || |||||||| || Sbjct 1263405 TACCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 1263464 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || |||||| ||||| || || ||| |||||||||||||||| || || | Sbjct 1263465 AAAGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGG 1263524 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| || || || || | || | |||||| | ||| | Sbjct 1263525 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAA 1263584 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | ||||||||||||||||| || ||||| |||||||| Sbjct 1263585 CCTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263633 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | | || |||||| |||| || ||||| || || |||||||| || Sbjct 1263633 TACCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 1263692 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || |||||| ||||| || || ||| |||||||||||||||| || || | Sbjct 1263693 AAAGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGG 1263752 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| || || || || | || | |||||| | ||| | Sbjct 1263753 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAA 1263812 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | ||||||||||||||||| || ||||| |||||||| Sbjct 1263813 CCTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263861 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | | || |||||| |||| || ||||| || || |||||||| || Sbjct 1263861 TACCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 1263920 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || |||||| ||||| || || ||| |||||||||||||||| || || | Sbjct 1263921 AAAGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGG 1263980 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| || || || || | || | |||||| | ||| | Sbjct 1263981 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAA 1264040 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | ||||||||||||||||| || ||||| |||||||| Sbjct 1264041 CCTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1264089 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | | || |||||| |||| || ||||| || || |||||||| || Sbjct 1264089 TACCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 1264148 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || |||||| ||||| || || ||| |||||||||||||||| || || | Sbjct 1264149 AAAGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGG 1264208 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| || || || || | || | |||||| | ||| | Sbjct 1264209 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAA 1264268 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | |||||||| |||| ||||| ||||| |||||||| Sbjct 1264269 CCTCCAAGGTGATGGTTTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 1264317 >seq35 Length=832945 Score = 129 bits (142), Expect = 5e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | || ||||| || || |||||||| ||| || ||| || ||||| Sbjct 773668 CACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTC 773727 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| | || | |||||||||||| || || |||||||||||||| Sbjct 773728 CAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 773787 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||||| | ||||||||||| ||| | || || Sbjct 773788 GATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTT 773847 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| ||||| || || || || ||||||||| Sbjct 773848 GCCAGTCAGGGTCTTCACGAAGATCTGCATG 773878 Score = 129 bits (142), Expect = 5e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | || ||||| || || |||||||| ||| || ||| || ||||| Sbjct 773896 CACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTC 773955 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| | || | |||||||||||| || || |||||||||||||| Sbjct 773956 CAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 774015 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||||| | ||||||||||| ||| | || || Sbjct 774016 GATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTT 774075 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| ||||| || || || || ||||||||| Sbjct 774076 GCCAGTCAGGGTCTTCACGAAGATCTGCATG 774106 Score = 129 bits (142), Expect = 5e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | || ||||| || || |||||||| ||| || ||| || ||||| Sbjct 774124 CACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTC 774183 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| | || | |||||||||||| || || |||||||||||||| Sbjct 774184 CAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 774243 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||||| | ||||||||||| ||| | || || Sbjct 774244 GATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTTATGGTCTT 774303 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| ||||| || || || || ||||||||| Sbjct 774304 GCCAGTCAGGGTCTTCACGAAGATCTGCATG 774334 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | ||| ||||| || | || ||||| || || |||||||| ||| | Sbjct 773423 CCACCGCGAAGACGCAATACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 773482 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || ||||| ||||| || || || |||| | |||||||||||| || || Sbjct 773483 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGGA 773542 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| || || || || | |||| |||||||| | ||||||| Sbjct 773543 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACC 773602 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | ||| | || ||||| ||||| || || || || ||||||||| Sbjct 773603 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 773650 >seq51 Length=625475 Score = 95.1 bits (104), Expect = 1e-14 Identities = 223/335 (67%), Gaps = 9/335 (3%) Strand=Plus/Minus Query 46993 CCGCAGGCGATGCGACCGCCCGAGTTGCCGGTGGTCTTGCTCAATGGATGACCGCCGAGA 47052 |||||| | || || |||| | ||||||||||||||||||| || || || Sbjct 71573 CCGCAGCCAATACGGGCGCCGGCATTGCCGGTGGTCTTGCTCAGCTCGTGGCCACCCTTG 71514 Query 47053 CCCAAGTCGTCGCGGTCCGAGTGAATGACCAGACTGCGTCCGATGACGCTGTATTCGCCG 47112 |||||||| || || | ||| | ||||| ||||||| |||| ||||| | ||| Sbjct 71513 CCCAAGTCATCAGCATCGGCGTGGACGACCACGGTGCGTCCAATGATGCTGTCGGCACCG 71454 Query 47113 AAAAGACTCATCACGTTGTCGATCTTATCGATTTCGGTCAAACTGTTTGATTTTTTCGCT 47172 |||||| | ||| |||| | | || | || |||| ||| Sbjct 71453 AAAAGAGTGATCTTTGAGTCGGTGATGCTGACAGCCGTGGGGCTGTCGCCGGC---CGCC 71397 Query 47173 TCAATGTTACCCAGATCGCCTACGTGACGCTCGGCGGCGTTGGGAGCGCCGTGAT---TG 47229 | |||||| |||| ||||| | ||| || | || || |||| || ||||| | || Sbjct 71396 TGAATGTTGCCCAAGTCGCCCAAGTGGCGGTTCTCGTCGGTGGGGGCACCGTGCTCCTTG 71337 Query 47230 CGGCCCAACGGATTATAGTGTTCGCCGGCCGACGTGCAGCCGTTGCTCGTGTCGCCGAAT 47289 | || ||||| |||| ||||| |||| ||||||||||| | |||||||||| Sbjct 71336 CTGCGG---GGATTGAAGTGGGGGCCGGACGACATGCAGCCGTTGGTGTTGTCGCCGAAC 71280 Query 47290 TCGTGCACGTGAAATCCGTGAAGCCCCTTTGGAAG 47324 |||||||| || ||||| || || ||||| | ||| Sbjct 71279 TCGTGCACATGGAATCCATGCAGTCCCTTGGTAAG 71245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433820169059020