Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq252 123 5e-23 >seq252 Length=176535 Score = 123 bits (136), Expect = 5e-23 Identities = 186/262 (71%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 189449 CTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGA 189508 || |||||| || | || |||| ||||| |||| || || ||||| | ||| | || Sbjct 29766 CTGTGGAACTCGGCCCAGCTGCAACTGGTGCGAGAGGGCAAGATGCACGGATTTCTGCGC 29825 Query 189509 ATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTT-GAGTTA 189567 ||||| ||||| ||||||||||| || ||||| || || ||| | || | |||| Sbjct 29826 ATGTACTGGGCCAAGAAGATACTCGAGTGGACGGCCACGCCGGAACAGGCGCTCGAGTAC 29885 Query 189568 TAGTATCTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGG 189627 | | ||| | ||| |||||||| |||||||| ||||| ||||| || || || Sbjct 29886 TCGATTCTGCTC-AACGACAAGTACAGTCTAGACGGGCGCGATCCCAACGGCTATGTGGG 29944 Query 189628 TTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATATTTGG 189687 || |||||||| ||| | || ||||||| | | ||||| || | |||||||||| Sbjct 29945 CTGCATGTGGTCCATTGGGGGCATACACGACATGGGCTGGAAGGAGCGTGCGATATTTGG 30004 Query 189688 AAAGATAAGATATATGAATTAT 189709 |||||| | || ||||| ||| Sbjct 30005 AAAGATTCGCTACATGAACTAT 30026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923174470177400