Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq16 120 7e-22 >seq16 Length=1810876 Score = 120 bits (132), Expect = 7e-22 Identities = 259/383 (68%), Gaps = 16/383 (4%) Strand=Plus/Plus Query 254008 ATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCC 254067 || |||| || ||||||| ||||| || ||||| ||| ||||||||||| |||| Sbjct 182271 ATATGCTGCTCTACGGTCCACCCGGCACGGGCAAAACGAGCACCATCCTGGCAGCAGCCC 182330 Query 254068 GAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACG 254127 | | || ||||| | ||| | || ||| | |||||||||||||| || || | Sbjct 182331 GCCAGATCTTTGGCGACATGTACAAG---GATCGCATACTCGAGCTGAACGCCTCCGATG 182387 Query 254128 AACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATGTCG------- 254180 | || || | | || || ||| ||| ||||||| |||||| || | ||| Sbjct 182388 AGCGTGGCATCAATGTGGTGCGCACCAAAATCAAGAACTTCTCCCAGCTATCGGCCAGCC 182447 Query 254181 ATTTCGTCGTTCCAAC--CCGGCT-GT-CCGCCTTTCAAGCTCGTGATCCTGGACGAGGC 254236 || | ||| || | ||| | || || || |||||| || | |||||||||||||| Sbjct 182448 ATGTG--CGTCCCGATGGCCGCCCAGTGCCTCCATTCAAGATCATCATCCTGGACGAGGC 182505 Query 254237 GGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGT 254296 ||| | |||||| | ||| ||||||||||| || || || ||||||| | | | Sbjct 182506 CGACTCGATGACGCATGCCGCTCAGTCCGCCCTGCGACGGACCATGGAGAAGGAGAGCAG 182565 Query 254297 TGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTC 254356 || || || ||||| | |||||||| ||| || ||||| | || | | || Sbjct 182566 CAGCACACGCTTCTGCCTTATTTGCAACTATGTGACGCGCATCATTGTGCCCATTACGTC 182625 Query 254357 TCGGTGCGCCAAGTTTCGATTCA 254379 || ||| |||||||||| |||| Sbjct 182626 GCGCTGCTCCAAGTTTCGCTTCA 182648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073739778982080