Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq35 127 2e-24
seq6 125 6e-24
seq23 111 1e-19
>seq35
Length=832945
Score = 127 bits (140), Expect = 2e-24
Identities = 160/220 (73%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||| |||| || ||||||||| |||||||||||| || || |||| |||
Sbjct 774125 ACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCC 774184
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| ||||| ||||| || || || || | ||||||||||||
Sbjct 774185 AGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 774244
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | ||||| ||| ||||| | ||| || ||||||
Sbjct 774245 ATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTTATGGTCTTG 774304
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTCAAT 45347
|| ||||| |||||||| ||||| ||||||||| || |||
Sbjct 774305 CCAGTCAGGGTCTTCACGAAGATCTGCATGTTGGCTAAAT 774344
Score = 123 bits (136), Expect = 2e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184
|||||||| |||| || ||||||||| |||||||||||| || || ||||
Sbjct 773438 AATACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCC 773497
Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
||||| || || ||||| || ||||| ||||| || || || || | ||||||||||||
Sbjct 773498 TCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 773557
Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304
|| || ||| || | | | | ||||| ||| ||||||| ||| || |||
Sbjct 773558 TGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTC 773617
Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
||||| ||||| |||||||| ||||| ||||||
Sbjct 773618 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 773650
Score = 118 bits (130), Expect = 8e-22
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||| |||| || ||||||||| |||||||||||| || || |||| |||
Sbjct 773669 ACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCC 773728
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| ||||| ||||| || || || || | ||||||||||||
Sbjct 773729 AGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 773788
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | ||||| ||| ||||| | ||| || ||||||
Sbjct 773789 ATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTG 773848
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| ||||| |||||||| ||||| ||||||
Sbjct 773849 CCAGTCAGGGTCTTCACGAAGATCTGCATG 773878
Score = 118 bits (130), Expect = 8e-22
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||| |||| || ||||||||| |||||||||||| || || |||| |||
Sbjct 773897 ACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCC 773956
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| ||||| ||||| || || || || | ||||||||||||
Sbjct 773957 AGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 774016
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | ||||| ||| ||||| | ||| || ||||||
Sbjct 774017 ATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTG 774076
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| ||||| |||||||| ||||| ||||||
Sbjct 774077 CCAGTCAGGGTCTTCACGAAGATCTGCATG 774106
>seq6
Length=3104374
Score = 125 bits (138), Expect = 6e-24
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||||||||| || ||||||||| |||||||||||| ||| ||| | || |||
Sbjct 2898462 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCC 2898403
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| |||| ||||| || || || || | ||||||||||||
Sbjct 2898402 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 2898343
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| ||| ||||||| ||| || ||||||
Sbjct 2898342 ATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTG 2898283
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339
|| || ||||| |||||||| |||||||| ||
Sbjct 2898282 CCAGTGAGAGTTTTCACAAAAATTTGCATTTT 2898251
>seq23
Length=1278451
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||| || || ||| ||||||||| ||||||||||| || || | || |||
Sbjct 1263425 ACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTCC 1263484
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| || | ||||| ||||| || || | ||||||||||||
Sbjct 1263485 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 1263544
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| ||| ||||||| ||| || || |||
Sbjct 1263545 ATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTTG 1263604
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||||||||||||||||||| |||||
Sbjct 1263605 CCGGTCAGAGTCTTCACAAAGATCTGCAT 1263633
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||| || || ||| ||||||||| ||||||||||| || || | || |||
Sbjct 1263653 ACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTCC 1263712
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| || | ||||| ||||| || || | ||||||||||||
Sbjct 1263713 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 1263772
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| ||| ||||||| ||| || || |||
Sbjct 1263773 ATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTTG 1263832
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||||||||||||||||||| |||||
Sbjct 1263833 CCGGTCAGAGTCTTCACAAAGATCTGCAT 1263861
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||| || || ||| ||||||||| ||||||||||| || || | || |||
Sbjct 1263881 ACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTCC 1263940
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| || | ||||| ||||| || || | ||||||||||||
Sbjct 1263941 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 1264000
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| ||| ||||||| ||| || || |||
Sbjct 1264001 ATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTTG 1264060
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||||||||||||||||||| |||||
Sbjct 1264061 CCGGTCAGAGTCTTCACAAAGATCTGCAT 1264089
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||| || || || ||||||||| ||||||||||| || || | || |||
Sbjct 1263197 ACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTCC 1263256
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| || | ||||| ||||| || || | ||||||||||||
Sbjct 1263257 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 1263316
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| ||| ||||||| ||| || || |||
Sbjct 1263317 ATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTTG 1263376
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||||||||||||||||||| |||||
Sbjct 1263377 CCGGTCAGAGTCTTCACAAAGATCTGCAT 1263405
Score = 100 bits (110), Expect = 2e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||| || || ||| ||||||||| ||||||||||| || || | || |||
Sbjct 1264109 ACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTCC 1264168
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| || | ||||| ||||| || || | ||||||||||||
Sbjct 1264169 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 1264228
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| ||| ||||||| ||| || || |||
Sbjct 1264229 ATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAAGGTGATGGTTTTG 1264288
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
|| |||| || ||||||||||| ||||| |||
Sbjct 1264289 CCAGTCAAGGTTTTCACAAAGATCTGCATTTTG 1264321
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395065883015635
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