Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq111 132 1e-25
seq162 107 4e-18
>seq111
Length=362587
Score = 132 bits (146), Expect = 1e-25
Identities = 298/445 (67%), Gaps = 7/445 (2%)
Strand=Plus/Minus
Query 101915 ATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTC 101974
||| |||||||||| || || |||||||||||||| || || || || || || ||
Sbjct 244808 ATTATTGCCTTTGCAGCCGTGGAAGGAATCTTCTTCAGCGGCAGCTTTGCCTCGATCTTT 244749
Query 101975 TGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGG 102034
||| | ||||| | || | |||| ||||| |||| |||||| ||| | || ||| |
Sbjct 244748 TGGCTGAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCTCGT 244689
Query 102035 GACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTT--TGTTGATA 102092
||||||||||| || |||||||||| |||| || | || | | || |
Sbjct 244688 GACGAAGGTCTCCACTGCGACTTTGC---GGTGCTCATGTACCAGCATCTGGTGCAGCGT 244632
Query 102093 CCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAAT 102152
||| | | | || | ||| |||| || | | || || ||| ||| || ||||| |
Sbjct 244631 CCCAAGC--GGGAGCGCATTATTGAGATCATTAGGGATGCTGTCGAAATCGAGCAAGAGT 244574
Query 102153 TTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGT 102212
| ||||| | ||||||| || || | || ||||||||| | ||| |||||
Sbjct 244573 TCCTCACCGAAGCCCTGCCCTGCAATTTGATTGGCATGAACTGCGTCCTCATGTCCCAGT 244514
Query 102213 ACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATG 102272
||||||||||||| || ||| || || | || | || | | ||| ||| ||
Sbjct 244513 ACATTGAATTTGTCGCCGATCGTCTGCTGATGGAGCTCGGTGTGGGTAAGATCTACAACA 244454
Query 102273 TTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTG 102332
|| || |||||| |||||||| | || || || || ||||| ||||| ||||
Sbjct 244453 CTAAGAATCCCTTCAGTTTCATGGATATGATCTCTCTGGACGGAAAGACAAACTTCTTTG 244394
Query 102333 AAAAGAGAGTCGCCGAGTATCAACG 102357
| || | || |||||||| || ||
Sbjct 244393 AGAAAAAGGTTGCCGAGTACCAGCG 244369
>seq162
Length=246154
Score = 107 bits (118), Expect = 4e-18
Identities = 282/428 (66%), Gaps = 8/428 (2%)
Strand=Plus/Plus
Query 35395 GGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATAC 35454
||||||| |||| || || || || || || ||||| || |||||||| || |||| ||
Sbjct 67772 GGGAGATCTGGGTCCTGTCTATGGCTTTCAGTGGCGACACTTTGGTGCCGAGTATGGCAC 67831
Query 35455 CTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCT 35514
||| || || | || ||||| || || || ||| | | || | | |||| |
Sbjct 67832 CTGCGACGATGACTACAGCGGCAAGGGAATCGACCAGTTGCGCCAGGTAATTAGGACCAT 67891
Query 35515 GAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCA 35574
|| || |||||| ||| | | || |||||| | || |||||||| |||| | |
Sbjct 67892 CAGGGATAATCCATCCGATCGTCGCATCATTATGTCCGCCTGGAATCCCCTGGACATACC 67951
Query 35575 CCTTATGGCTCTTCCTCCATGCCACATGACT-GCTCAATTTTATGTGGCTAAT------G 35627
||||| | || || |||||| || || || ||||| || || || | |
Sbjct 67952 AAAAATGGCATTACCCCCCTGCCAC-TGCCTTGCACAATTCTACGTCTCTCAAACTCGAG 68010
Query 35628 GAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCA 35687
|||| | || |||||| |||||||||| |||| || | || |||||||||||||||
Sbjct 68011 GAGAGCTCTCCTGCCAGCTGTATCAGCGGAGCGCCGACATGGGCCTGGGCGTGCCCTTCA 68070
Query 35688 ATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGG 35747
| || || || || | || || || || |||| || | | ||| | || |||
Sbjct 68071 ACATCGCCTCCTATGCCCTGCTCACCCACATGATTGCACATGTAACGGGCTTGAAGACGG 68130
Query 35748 GAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAATACCCACATTGAGGTGTTAA 35807
| || ||| ||| ||| | || ||| | || | ||| || ||| |||| |||
Sbjct 68131 GCGATTTTGTCCACACCATGGGCGACACTCATGTGTATCTTAACCATGTTGATCCACTAA 68190
Query 35808 AGAAGCAG 35815
|| |||||
Sbjct 68191 AGGAGCAG 68198
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989559466047925
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |