Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq111 132 1e-25 seq162 107 4e-18 >seq111 Length=362587 Score = 132 bits (146), Expect = 1e-25 Identities = 298/445 (67%), Gaps = 7/445 (2%) Strand=Plus/Minus Query 101915 ATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTC 101974 ||| |||||||||| || || |||||||||||||| || || || || || || || Sbjct 244808 ATTATTGCCTTTGCAGCCGTGGAAGGAATCTTCTTCAGCGGCAGCTTTGCCTCGATCTTT 244749 Query 101975 TGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGG 102034 ||| | ||||| | || | |||| ||||| |||| |||||| ||| | || ||| | Sbjct 244748 TGGCTGAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCTCGT 244689 Query 102035 GACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTT--TGTTGATA 102092 ||||||||||| || |||||||||| |||| || | || | | || | Sbjct 244688 GACGAAGGTCTCCACTGCGACTTTGC---GGTGCTCATGTACCAGCATCTGGTGCAGCGT 244632 Query 102093 CCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAAT 102152 ||| | | | || | ||| |||| || | | || || ||| ||| || ||||| | Sbjct 244631 CCCAAGC--GGGAGCGCATTATTGAGATCATTAGGGATGCTGTCGAAATCGAGCAAGAGT 244574 Query 102153 TTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGT 102212 | ||||| | ||||||| || || | || ||||||||| | ||| ||||| Sbjct 244573 TCCTCACCGAAGCCCTGCCCTGCAATTTGATTGGCATGAACTGCGTCCTCATGTCCCAGT 244514 Query 102213 ACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATG 102272 ||||||||||||| || ||| || || | || | || | | ||| ||| || Sbjct 244513 ACATTGAATTTGTCGCCGATCGTCTGCTGATGGAGCTCGGTGTGGGTAAGATCTACAACA 244454 Query 102273 TTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTG 102332 || || |||||| |||||||| | || || || || ||||| ||||| |||| Sbjct 244453 CTAAGAATCCCTTCAGTTTCATGGATATGATCTCTCTGGACGGAAAGACAAACTTCTTTG 244394 Query 102333 AAAAGAGAGTCGCCGAGTATCAACG 102357 | || | || |||||||| || || Sbjct 244393 AGAAAAAGGTTGCCGAGTACCAGCG 244369 >seq162 Length=246154 Score = 107 bits (118), Expect = 4e-18 Identities = 282/428 (66%), Gaps = 8/428 (2%) Strand=Plus/Plus Query 35395 GGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATAC 35454 ||||||| |||| || || || || || || ||||| || |||||||| || |||| || Sbjct 67772 GGGAGATCTGGGTCCTGTCTATGGCTTTCAGTGGCGACACTTTGGTGCCGAGTATGGCAC 67831 Query 35455 CTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCT 35514 ||| || || | || ||||| || || || ||| | | || | | |||| | Sbjct 67832 CTGCGACGATGACTACAGCGGCAAGGGAATCGACCAGTTGCGCCAGGTAATTAGGACCAT 67891 Query 35515 GAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCA 35574 || || |||||| ||| | | || |||||| | || |||||||| |||| | | Sbjct 67892 CAGGGATAATCCATCCGATCGTCGCATCATTATGTCCGCCTGGAATCCCCTGGACATACC 67951 Query 35575 CCTTATGGCTCTTCCTCCATGCCACATGACT-GCTCAATTTTATGTGGCTAAT------G 35627 ||||| | || || |||||| || || || ||||| || || || | | Sbjct 67952 AAAAATGGCATTACCCCCCTGCCAC-TGCCTTGCACAATTCTACGTCTCTCAAACTCGAG 68010 Query 35628 GAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCA 35687 |||| | || |||||| |||||||||| |||| || | || ||||||||||||||| Sbjct 68011 GAGAGCTCTCCTGCCAGCTGTATCAGCGGAGCGCCGACATGGGCCTGGGCGTGCCCTTCA 68070 Query 35688 ATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGG 35747 | || || || || | || || || || |||| || | | ||| | || ||| Sbjct 68071 ACATCGCCTCCTATGCCCTGCTCACCCACATGATTGCACATGTAACGGGCTTGAAGACGG 68130 Query 35748 GAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAATACCCACATTGAGGTGTTAA 35807 | || ||| ||| ||| | || ||| | || | ||| || ||| |||| ||| Sbjct 68131 GCGATTTTGTCCACACCATGGGCGACACTCATGTGTATCTTAACCATGTTGATCCACTAA 68190 Query 35808 AGAAGCAG 35815 || ||||| Sbjct 68191 AGGAGCAG 68198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989559466047925