Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq328 580 1e-160
seq111 138 1e-27
>seq328
Length=165906
Score = 580 bits (642), Expect = 1e-160
Identities = 1266/1878 (67%), Gaps = 26/1878 (1%)
Strand=Plus/Minus
Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096
||||| | ||| ||||| || | | || || ||||| || |||| ||| ||||||||
Sbjct 107408 TTGTCGACTGTAAATTGTATTGCATTGGCAGCTGGTTTTGTGCGTAAATAATACATTCCG 107349
Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156
|||||||| || |||| | ||||||| || || | ||| || | ||
Sbjct 107348 GTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTAGGC 107289
Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216
|| || | ||| | ||| | || ||||||||||| || || || || || || ||||||
Sbjct 107288 TCGGCCACATGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCC 107229
Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 62275
|| || || | | || || ||||||||| | |||||||||| |||| || ||
Sbjct 107228 ATCTTAATTGTGGATTTAACTGAAATTTCCCACACTGTTTTATAAAGATCGCG-AACATT 107170
Query 62276 TTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGAT 62332
|| |||| |||| |||| |||||||| || | | | || || |||| || ||
Sbjct 107169 TTGGGGAATAGTTTCAATATTTTGAATGGAGCCCCTACTTGAAATTATTTTATTTTTCAT 107110
Query 62333 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTG 62392
||||||| |||||| | ||| |||||| | || | | ||| | || || |||||
Sbjct 107109 ATCATCATCCCATAAGTCCAACTCTGTTAAATCCCTTAATAAATGATGATTGACCACTTG 107050
Query 62393 GAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTC 62452
||||| ||||| ||||||| | || || |||||| | ||||| ||||| | || ||
Sbjct 107049 AAATTCACCAGATAATACTCGTCTCGTATATATATTAGTTGTATATGGTTCGAATGATTC 106990
Query 62453 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 62512
||||| |||| |||||| ||||| ||||| || |||||||| || || || || |||
Sbjct 106989 GTTATTACCCATAATTTGGGCAGTAGATGCTGTAGGCATAGGAGCTACTAACAACGAATT 106930
Query 62513 TCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGG 62572
|||| |||| | || | || | ||||| || | || ||||| ||| | | || ||
Sbjct 106929 CCTAATTCCGTGTTTTTTAATGTCTTCTTTCAGGTTTTGCCAATCCCATAAGTTCGTTGG 106870
Query 62573 TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATATG 62631
| |||||||||||| || || || | | || |||| ||| |
Sbjct 106869 AGTTTTATCCCACATATCATATTGTAGAATGCCATTGCTTACAGGACT-TCCTTTATAGG 106811
Query 62632 TATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAA 62691
| || || || || | | || |||| |||||| || ||||| || || ||||||
Sbjct 106810 TTTCGTACGGACCAAATATTTGAGAAAGTTCACAACTAGCTTCTAAAGCCCCAAAATAAA 106751
Query 62692 TGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTA 62751
| |||||||| || | | |||| | ||||| || ||| | ||| || |
Sbjct 106750 TAGTTTCAAATATTTGTTGGTTTAAAAGACTAGCTTCTTCACTTTCATAGGGAAAACGCA 106691
Query 62752 AGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62811
||||| || ||||| || || ||||||||||| ||||| || || | ||| || ||
Sbjct 106690 TTAGAATTAAAGCGTCAGCGAAACCTTGAACACCTATACCAATTGGACGATGCCTTAAAT 106631
Query 62812 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62871
| || | | ||||||||| | || ||||| || || ||||| |||||||| ||||||
Sbjct 106630 TGGATTTCTTAGCTTCTGGCAAGGGGTAATAGTTGATGTCTATTATTTTATTAAGATTTT 106571
Query 62872 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTA 62928
| ||| |||| ||||| || | ||| ||||||||| ||| |||
Sbjct 106570 TAGCAACAGTTTTGGTTACATCTTTTAATTTTTTGAAATCAAATGTTTTTTCTGGTGTTA 106511
Query 62929 CAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCAT 62988
|||||||||| | ||||| || || | ||| || || || | ||||| || | | |
Sbjct 106510 CAAACATGTTAAGTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATCAGGTGCAGAGT 106451
Query 62989 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTAC 63048
| | | || || || || | |||||| || || ||||| || | |||||||||||| |
Sbjct 106450 ACTCAACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGATTGC 106391
Query 63049 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 63108
||||| | ||||| | ||||||| |||| ||| |||| |||||||||||| || ||||
Sbjct 106390 TCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCAACTTGCGATT 106331
Query 63109 CTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATA-GATTTGTATCTCCTTTCTCT 63166
||||||| || ||| | ||||| |||| || | | | |||| | | ||| ||||
Sbjct 106330 CTATAATGGCAAACCATAACGACT-GAGCTTTCACTGTTCGATTAGCACGTCC---CTCT 106275
Query 63167 T--TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGA 63224
| || ||| ||| | | | || || | || |||||||||| | | || ||||
Sbjct 106274 TGCTCATATTTGACATAAAGTTGCTCAAATTTTTCGCCCCAAACATCTTGAAGTCCAGGA 106215
Query 63225 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAG 63283
|||| || ||||||||||||||||| | | | | | ||||| | |||||||| || ||
Sbjct 106214 CATTTATGTGGACACATCAACGACCAGTTTTCATT-TGCTTCAACCCGTTTCATGAAAAG 106156
Query 63284 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATT 63343
||| |||||||| | ||| ||| ||||| | || || | ||| || ||||| || ||
Sbjct 106155 ATCGGGAATCCATAAAGCATAAAAAAGATCCCGTGCTCGGTTTTCTTCTTTTCCAGTGTT 106096
Query 63344 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63403
|||| || || | || | | || ||| |||||||| || || || || || || |
Sbjct 106095 TCTTTTGAGGTCTAAAAATTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAAA 106036
Query 63404 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63463
| ||||| | ||| ||||||||||| | |||| || |||||| | |||||
Sbjct 106035 GGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGTGCCACATTATTAAATACTCT 105976
Query 63464 CAACATTGGAA-TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGG 63522
| |||||||| |||| || ||||| |||| || || || | || | || |||
Sbjct 105975 TAGCATTGGAACTAAT-CCATTTGAAGTACCGTTCGTTCCACATATGGAAGTGCCTTTGG 105917
Query 63523 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63582
|||||||| | || || || ||||| || || ||| || || | ||| |||
Sbjct 105916 CACGAATACAATGAACATTAAGTCCAATTCCACCCGCTGATTTGGAAATCATTGCACATT 105857
Query 63583 GTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGA--TCATGTTAAGTAGAAAACA 63640
||| | | | | | || ||||| || ||| ||| |||| | | ||||||||
Sbjct 105856 GTTCAACTGATTTAAAAATACCTTCAATTGAATC--CGAATTCATTGTCAAAAGAAAACA 105799
Query 63641 GCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700
|| | ||| | ||| | || | ||| ||| | || || || || ||||||||
Sbjct 105798 TGAGGATAGTTGAGGGCGATTTGTAGCAGCAGCAAAAAGAGTTGGCGAGGCATGCGTAAA 105739
Query 63701 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63760
|| || |||||||| ||||| || |||| ||||| | ||||| | ||||||
Sbjct 105738 ATATCGCTCTGAAAGTAGGTTGTAAGTTTCAACAGCTGCACCAATATCGTCTCCATGAAT 105679
Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTT 63820
|| | ||||| ||||||| |||||| || || | || ||||||| ||||||||
Sbjct 105678 ACCAAGAGCGACGCGCATTAGCATGTGTTGTGGACGCTCTGCAATTTTCCCATTTATTTT 105619
Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63880
| || ||||| || | || ||||| ||||||||||| || || || || ||
Sbjct 105618 AAGTAAATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCGAAATCACGATC 105559
Query 63881 GTAAATAATAACCGAATT 63898
||||||||| | || ||
Sbjct 105558 ATAAATAATAGCAGAGTT 105541
>seq111
Length=362587
Score = 138 bits (152), Expect = 1e-27
Identities = 288/427 (67%), Gaps = 3/427 (1%)
Strand=Plus/Plus
Query 33585 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCG 33644
|| || |||||||| ||||| ||||| | | || | ||||| || || || || |||
Sbjct 244663 GCAAAGTCGCAGTGGAGACCTTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCG 244722
Query 33645 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATT 33704
||||| ||||||||||| || |||||||| || || || || ||| |||||||||
Sbjct 244723 GGCATGAGGCCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTGAAGAAGATT 244782
Query 33705 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCTGTCATG--TATC 33761
||||| || || ||||||||||||| | ||| || | || || | || | ||||
Sbjct 244783 CCTTCCACGGCTGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATATC 244842
Query 33762 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33821
|| | ||||| || ||||| |||||| ||||| || || | ||||| ||
Sbjct 244843 CAGGACAGGGCCCAGTCTGCCTTGCGCTTTACAGCCGGCATGGTCTCAACAGCATTGAAC 244902
Query 33822 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33881
| |||| || || || | || || || || | | || ||||| ||
Sbjct 244903 AAGTAGTCGCGCTCCTTCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCG 244962
Query 33882 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 33941
|| || | ||| || ||||| ||||| || |||||||| || | ||||| || ||||||
Sbjct 244963 GAGTGCACGTTCTCCATGGCAATCTGGAAGCCGTAGAAGCAACGCGCCTCCGTGATCTGC 245022
Query 33942 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAA 34001
|| || || || || || | | ||| || || || || ||||| ||| || ||
Sbjct 245023 ACCTCCTGACTGAAGCGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCAGCGAAG 245082
Query 34002 AACGCCA 34008
|| ||||
Sbjct 245083 AAGGCCA 245089
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629802366286800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |