Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq328 453 1e-122
>seq328
Length=165906
Score = 453 bits (502), Expect = 1e-122
Identities = 1228/1849 (66%), Gaps = 40/1849 (2%)
Strand=Plus/Minus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
|| ||||| |||| ||| | ||| | || | |||||| | | |||||||||||| |||
Sbjct 107405 TCGACTGTAAATTGTATTGCATTGGCAGCTGGTTTTGTGCGTAAATAATACATTCCGGTT 107346
Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909
||||| || | |||| | ||||||| || |||| |||| |||| |||| |
Sbjct 107345 TTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTAGGCTCG 107286
Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969
| | || | | | || ||||||||||| ||||| |||||||| || || |||||
Sbjct 107285 GCCACATGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCCATC 107226
Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029
| | | |||| || || ||||| || |||||||| | | | ||| |
Sbjct 107225 TTAATTGTGGATTTAACTGAAATTTCCCACACTGTTTTATAAAGATCGCGAACATTTTGG 107166
Query 37030 GGTAAA---TCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCA 37086
|| | | || | || |||||| || || || | | | ||| |||| || || |||
Sbjct 107165 GGAATAGTTTCAATATTTTGAATGGAGCCCCTACTTGAAATTATTTTATTTTTCATATCA 107106
Query 37087 TTATTCCACATATTTCTACT-TATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAA 37145
| || ||| | | | | ||| | ||| || || |||| || |||| || || |||||
Sbjct 107105 TCATCCCATA-AGTCCAACTCTGTTAAATCCCTTAATAAATGATGATTGACCACTTGAAA 107047
Query 37146 ATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATT 37205
|| ||||||||||||| ||| ||||||||||| | ||||||||||| | || || ||
Sbjct 107046 TTCACCAGATAATACTCGTCTCGTATATATATTAGTTGTATATGGTTCGAATGATTCGTT 106987
Query 37206 ATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCT 37265
||||| | ||||| | |||||||| |||||||| || |||| || | ||| ||
Sbjct 106986 ATTACCCATAATTTGGGCAGTAGATGCTGTAGGCATAGGAGCTACTAACAACGAATTCCT 106927
Query 37266 CAATCCATGTGTATTAATTCTCTTTTTT-AGTTCATTCCAATCCCATAAATCTGTTGGGT 37324
| ||| ||| | ||||| |||| ||| || | | |||||||||||| | |||||
Sbjct 106926 AATTCCGTGTTTTTTAATG-TCTTCTTTCAGGTTTTGCCAATCCCATAAGTTCGTTGGAG 106868
Query 37325 TCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCT 37384
| || ||||||||||||||||||||| || || || | ||| | ||||| || |
Sbjct 106867 TTTTATCCCACATATCATATTGTAGAATGCCATTGCTTACAGGACTTCCTTTATAGGTTT 106808
Query 37385 CATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTG 37444
| || || || | |||| || ||||| ||||||| ||||| || || |||| || |
Sbjct 106807 CGTACGGACCAAATATTTGAGAAAGTTCACAACTAGCTTCTAAAGCCCCAAAATAAATAG 106748
Query 37445 TTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATA 37504
|||| || |||||| ||||| | | |||||||| || || | | | | | || ||
Sbjct 106747 TTTCAAATATTTGTTGGTTTAAAAGACTAGCTTCTTCACTTTCATAGGGAAAACGCATTA 106688
Query 37505 ATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAG 37564
|| || | ||||| ||||| |||||||| ||||| || || | ||| | ||| |
Sbjct 106687 GAATTAAAGCGTCAGCGAAACCTTGAACACCTATACCAATTGGACGATGCCTTAAATTGG 106628
Query 37565 ATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAA 37624
|| | | |||| || || ||||| ||||| |||||||||||||| |||||||||
Sbjct 106627 ATTTCTTAGCTTCTGGCAAGGGGTAATAGTTGATGTCTATTATTTTATTAAGATTTTTAG 106568
Query 37625 CTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATTAT----TAACA 37680
| | |||| || | | | || || | ||| || || || || | | |||
Sbjct 106567 CAACAGTTTTGGTTACATCTTTTAATTTTTTGAA-ATCAAATGTTTTTTCTGGTGTTACA 106509
Query 37681 AATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAA-- 37738
|| | | | | ||| || ||| ||| || ||||| | ||||| | | | |
Sbjct 106508 AACATGTTAAGTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATC--AGGTGCAGAGT 106451
Query 37739 ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGG 37798
| | | ||| |||||||| | |||||| || |||| || || | ||| |||||||
Sbjct 106450 ACTCAACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGATTGC 106391
Query 37799 ATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCT 37858
||| ||||||| ||||| ||| | || || || || | || ||| | ||| | |
Sbjct 106390 TCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCAACTTGCGATT 106331
Query 37859 CGATAATAGATTTCCATAAACTTCT-TGCTTTAAC-GATCGCTTTAAtttttttCTTTGT 37916
| ||||| | |||| ||| || ||||| || | ||| ||| | || |
Sbjct 106330 CTATAATGGCAAACCAT-AACGACTGAGCTTTCACTGTTCG-ATTAGCACGTCCCTCTTG 106273
Query 37917 TTCGTATTCTATATATAATTTGTTAAAATCATTC-CCCCATACATCGCATAATCCTGGAC 37975
|| |||| | ||| || ||| | |||| ||| ||||| ||||| | ||| ||||
Sbjct 106272 CTCATATTTGACATA-AAGTTGCTCAAATTTTTCGCCCCAAACATCTTGAAGTCCAGGAC 106214
Query 37976 ATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAAT 38035
||| ||||||||| | ||||| | ||||| | ||| || |||| ||| || | ||
Sbjct 106213 ATTTATGTGGACACATCAACGACCAGTTTTCATTTGCTTCAACCCGTTTCATGAAAAGAT 106154
Query 38036 CAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCT 38095
| || | |||||| ||| ||| | ||| | || | |||||| || | || | |
Sbjct 106153 CGGGAATCCATAAAGCATAAAAAAGATCCCGTGCTCGGTTTTCTTCTTT---TCCAGTGT 106097
Query 38096 TTCTT---AAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACA 38152
||||| | | || ||| || || | ||| | ||||| || |||| |||||| | |
Sbjct 106096 TTCTTTTGAGGTCTAAAAATTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAA 106037
Query 38153 TTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTC 38212
|| || |||||||| |||||||||||| || ||||| | |||||| ||| ||
Sbjct 106036 AGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGTGCCACATTATTAAATACTC 105977
Query 38213 TTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAG 38272
||| ||| || |||| ||||| || | ||||| | || |||| |||| || || |
Sbjct 105976 TTAGCATTGGAACTAATCCATTTGAAGTACCGTTCGTTCCACATATGGAAGTGCCTTTGG 105917
Query 38273 CTCGTATATTACTTATCGACAA-TCCTATTCCACCTGCATGTTTTGATATTAAAGCGCAT 38331
| || ||| | | | | || ||| |||||||| || ||| || || | || |||
Sbjct 105916 CACGAATA-CAATGAACATTAAGTCCAATTCCACCCGCTGATTTGGAAATCATTGCACAT 105858
Query 38332 TGTTTTAACGTATCAAATATACCTTCTATACTGTCATCC---TTTATTGGTAGTATAAAA 38388
|||| | | | ||| |||||||| || || |||| || |||| | | ||||
Sbjct 105857 TGTTCAACTGATTTAAAAATACCTTCAAT--TG-AATCCGAATTCATTGTCAAAAGAAAA 105801
Query 38389 CAACTAGACATTTGA-GGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTAT 38447
|| || | |||| ||| || || | || ||| | || || || ||||| |
Sbjct 105800 CATGAGGATAGTTGAGGGCGAT-TTGTAGCAGCAGCAAAAAGAGTTGGCGAGGCATGCGT 105742
Query 38448 GAACCATTTTTCCGACAAATA-ATTATATGTTTCTATTACATCATCTATATCACCGCCGT 38506
|| || || || || || || || ||||| | | || | ||||| | || |
Sbjct 105741 AAAATATCGCTCTGA-AAGTAGGTTGTAAGTTTCAACAGCTGCACCAATATCGTCTCCAT 105683
Query 38507 GAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCT 38566
||||||| |||| || | ||||||||| |||||||| | ||| ||||| |||
Sbjct 105682 GAATACCAAGAGCGACGCGCATTAGCATGTGTTGTGGACGCTCTGCAATTTTCCCATTTA 105623
Query 38567 GTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATA 38615
|||||||| ||| || || | || || | ||||||||| ||||
Sbjct 105622 TTTTAAGTAAATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATA 105574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468513467556400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |