Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq328 453 1e-122 >seq328 Length=165906 Score = 453 bits (502), Expect = 1e-122 Identities = 1228/1849 (66%), Gaps = 40/1849 (2%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || ||||| |||| ||| | ||| | || | |||||| | | |||||||||||| ||| Sbjct 107405 TCGACTGTAAATTGTATTGCATTGGCAGCTGGTTTTGTGCGTAAATAATACATTCCGGTT 107346 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 ||||| || | |||| | ||||||| || |||| |||| |||| |||| | Sbjct 107345 TTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTAGGCTCG 107286 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | || | | | || ||||||||||| ||||| |||||||| || || ||||| Sbjct 107285 GCCACATGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCCATC 107226 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | | | |||| || || ||||| || |||||||| | | | ||| | Sbjct 107225 TTAATTGTGGATTTAACTGAAATTTCCCACACTGTTTTATAAAGATCGCGAACATTTTGG 107166 Query 37030 GGTAAA---TCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCA 37086 || | | || | || |||||| || || || | | | ||| |||| || || ||| Sbjct 107165 GGAATAGTTTCAATATTTTGAATGGAGCCCCTACTTGAAATTATTTTATTTTTCATATCA 107106 Query 37087 TTATTCCACATATTTCTACT-TATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAA 37145 | || ||| | | | | ||| | ||| || || |||| || |||| || || ||||| Sbjct 107105 TCATCCCATA-AGTCCAACTCTGTTAAATCCCTTAATAAATGATGATTGACCACTTGAAA 107047 Query 37146 ATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATT 37205 || ||||||||||||| ||| ||||||||||| | ||||||||||| | || || || Sbjct 107046 TTCACCAGATAATACTCGTCTCGTATATATATTAGTTGTATATGGTTCGAATGATTCGTT 106987 Query 37206 ATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCT 37265 ||||| | ||||| | |||||||| |||||||| || |||| || | ||| || Sbjct 106986 ATTACCCATAATTTGGGCAGTAGATGCTGTAGGCATAGGAGCTACTAACAACGAATTCCT 106927 Query 37266 CAATCCATGTGTATTAATTCTCTTTTTT-AGTTCATTCCAATCCCATAAATCTGTTGGGT 37324 | ||| ||| | ||||| |||| ||| || | | |||||||||||| | ||||| Sbjct 106926 AATTCCGTGTTTTTTAATG-TCTTCTTTCAGGTTTTGCCAATCCCATAAGTTCGTTGGAG 106868 Query 37325 TCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCT 37384 | || ||||||||||||||||||||| || || || | ||| | ||||| || | Sbjct 106867 TTTTATCCCACATATCATATTGTAGAATGCCATTGCTTACAGGACTTCCTTTATAGGTTT 106808 Query 37385 CATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTG 37444 | || || || | |||| || ||||| ||||||| ||||| || || |||| || | Sbjct 106807 CGTACGGACCAAATATTTGAGAAAGTTCACAACTAGCTTCTAAAGCCCCAAAATAAATAG 106748 Query 37445 TTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATA 37504 |||| || |||||| ||||| | | |||||||| || || | | | | | || || Sbjct 106747 TTTCAAATATTTGTTGGTTTAAAAGACTAGCTTCTTCACTTTCATAGGGAAAACGCATTA 106688 Query 37505 ATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAG 37564 || || | ||||| ||||| |||||||| ||||| || || | ||| | ||| | Sbjct 106687 GAATTAAAGCGTCAGCGAAACCTTGAACACCTATACCAATTGGACGATGCCTTAAATTGG 106628 Query 37565 ATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAA 37624 || | | |||| || || ||||| ||||| |||||||||||||| ||||||||| Sbjct 106627 ATTTCTTAGCTTCTGGCAAGGGGTAATAGTTGATGTCTATTATTTTATTAAGATTTTTAG 106568 Query 37625 CTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATTAT----TAACA 37680 | | |||| || | | | || || | ||| || || || || | | ||| Sbjct 106567 CAACAGTTTTGGTTACATCTTTTAATTTTTTGAA-ATCAAATGTTTTTTCTGGTGTTACA 106509 Query 37681 AATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAA-- 37738 || | | | | ||| || ||| ||| || ||||| | ||||| | | | | Sbjct 106508 AACATGTTAAGTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATC--AGGTGCAGAGT 106451 Query 37739 ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGG 37798 | | | ||| |||||||| | |||||| || |||| || || | ||| ||||||| Sbjct 106450 ACTCAACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGATTGC 106391 Query 37799 ATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCT 37858 ||| ||||||| ||||| ||| | || || || || | || ||| | ||| | | Sbjct 106390 TCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCAACTTGCGATT 106331 Query 37859 CGATAATAGATTTCCATAAACTTCT-TGCTTTAAC-GATCGCTTTAAtttttttCTTTGT 37916 | ||||| | |||| ||| || ||||| || | ||| ||| | || | Sbjct 106330 CTATAATGGCAAACCAT-AACGACTGAGCTTTCACTGTTCG-ATTAGCACGTCCCTCTTG 106273 Query 37917 TTCGTATTCTATATATAATTTGTTAAAATCATTC-CCCCATACATCGCATAATCCTGGAC 37975 || |||| | ||| || ||| | |||| ||| ||||| ||||| | ||| |||| Sbjct 106272 CTCATATTTGACATA-AAGTTGCTCAAATTTTTCGCCCCAAACATCTTGAAGTCCAGGAC 106214 Query 37976 ATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAAT 38035 ||| ||||||||| | ||||| | ||||| | ||| || |||| ||| || | || Sbjct 106213 ATTTATGTGGACACATCAACGACCAGTTTTCATTTGCTTCAACCCGTTTCATGAAAAGAT 106154 Query 38036 CAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCT 38095 | || | |||||| ||| ||| | ||| | || | |||||| || | || | | Sbjct 106153 CGGGAATCCATAAAGCATAAAAAAGATCCCGTGCTCGGTTTTCTTCTTT---TCCAGTGT 106097 Query 38096 TTCTT---AAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACA 38152 ||||| | | || ||| || || | ||| | ||||| || |||| |||||| | | Sbjct 106096 TTCTTTTGAGGTCTAAAAATTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAA 106037 Query 38153 TTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTC 38212 || || |||||||| |||||||||||| || ||||| | |||||| ||| || Sbjct 106036 AGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGTGCCACATTATTAAATACTC 105977 Query 38213 TTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAG 38272 ||| ||| || |||| ||||| || | ||||| | || |||| |||| || || | Sbjct 105976 TTAGCATTGGAACTAATCCATTTGAAGTACCGTTCGTTCCACATATGGAAGTGCCTTTGG 105917 Query 38273 CTCGTATATTACTTATCGACAA-TCCTATTCCACCTGCATGTTTTGATATTAAAGCGCAT 38331 | || ||| | | | | || ||| |||||||| || ||| || || | || ||| Sbjct 105916 CACGAATA-CAATGAACATTAAGTCCAATTCCACCCGCTGATTTGGAAATCATTGCACAT 105858 Query 38332 TGTTTTAACGTATCAAATATACCTTCTATACTGTCATCC---TTTATTGGTAGTATAAAA 38388 |||| | | | ||| |||||||| || || |||| || |||| | | |||| Sbjct 105857 TGTTCAACTGATTTAAAAATACCTTCAAT--TG-AATCCGAATTCATTGTCAAAAGAAAA 105801 Query 38389 CAACTAGACATTTGA-GGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTAT 38447 || || | |||| ||| || || | || ||| | || || || ||||| | Sbjct 105800 CATGAGGATAGTTGAGGGCGAT-TTGTAGCAGCAGCAAAAAGAGTTGGCGAGGCATGCGT 105742 Query 38448 GAACCATTTTTCCGACAAATA-ATTATATGTTTCTATTACATCATCTATATCACCGCCGT 38506 || || || || || || || || ||||| | | || | ||||| | || | Sbjct 105741 AAAATATCGCTCTGA-AAGTAGGTTGTAAGTTTCAACAGCTGCACCAATATCGTCTCCAT 105683 Query 38507 GAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCT 38566 ||||||| |||| || | ||||||||| |||||||| | ||| ||||| ||| Sbjct 105682 GAATACCAAGAGCGACGCGCATTAGCATGTGTTGTGGACGCTCTGCAATTTTCCCATTTA 105623 Query 38567 GTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATA 38615 |||||||| ||| || || | || || | ||||||||| |||| Sbjct 105622 TTTTAAGTAAATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATA 105574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468513467556400