Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq328 569 3e-157 seq111 138 1e-27 >seq328 Length=165906 Score = 569 bits (630), Expect = 3e-157 Identities = 1266/1880 (67%), Gaps = 30/1880 (2%) Strand=Plus/Minus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 ||||| | ||| ||||| || | | || || ||||| || |||| ||| |||||||| Sbjct 107408 TTGTCGACTGTAAATTGTATTGCATTGGCAGCTGGTTTTGTGCGTAAATAATACATTCCG 107349 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949 |||||||| || |||| | ||||||| || || | ||| || | || Sbjct 107348 GTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTAGGC 107289 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 || || | ||| | ||| | || ||||||||||| || || || || || || |||||| Sbjct 107288 TCGGCCACATGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCC 107229 Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 65068 || || || | | || || ||||||||| | |||||||||| |||| || || Sbjct 107228 ATCTTAATTGTGGATTTAACTGAAATTTCCCACACTGTTTTATAAAGATCGCG-AACATT 107170 Query 65069 TTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 65125 || |||| |||| |||| |||||||| || | | || || || |||| || || Sbjct 107169 TTGGGGAATAGTTTCAATATTTTGAATGGAGCCCCTACTTGAAATTATTTTATTTTTCAT 107110 Query 65126 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 65185 ||||||| |||||| | ||| |||||| | || | | ||| |||| || ||||| Sbjct 107109 ATCATCATCCCATAAGTCCAACTCTGTTAAATCCCTTAATAAATGATGATTGACCACTTG 107050 Query 65186 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 65245 |||||| ||||| ||||||| | || || |||||| | ||||| ||||| | || || Sbjct 107049 AAATTCACCAGATAATACTCGTCTCGTATATATATTAGTTGTATATGGTTCGAATGATTC 106990 Query 65246 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 65305 ||||| |||| |||||| ||||| ||||| || |||||||| || || || || ||| Sbjct 106989 GTTATTACCCATAATTTGGGCAGTAGATGCTGTAGGCATAGGAGCTACTAACAACGAATT 106930 Query 65306 TCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGG 65365 |||| |||| | || | || | ||||| || || ||||| ||| | | || || Sbjct 106929 CCTAATTCCGTGTTTTTTAATGTCTTCTTTCAGGTTTTGCCAATCCCATAAGTTCGTTGG 106870 Query 65366 TACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATG 65424 ||||||||| || || || | | || |||| ||| | Sbjct 106869 AGTTTTATCCCACATATCATATTGTAGAATGCCATTGCTTACAGGACT-TCCTTTATAGG 106811 Query 65425 TATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAA 65484 | ||||| || || | | || ||||||||||| || ||||| || || |||||| Sbjct 106810 TTTCGTACGGACCAAATATTTGAGAAAGTTCACAACTAGCTTCTAAAGCCCCAAAATAAA 106751 Query 65485 TGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTA 65544 | ||||| || || | | |||| | ||||| || ||| | ||| || | Sbjct 106750 TAGTTTCAAATATTTGTTGGTTTAAAAGACTAGCTTCTTCACTTTCATAGGGAAAACGCA 106691 Query 65545 AGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 65604 ||||| || ||||| || || ||||||||||| ||||| || || | ||| || || Sbjct 106690 TTAGAATTAAAGCGTCAGCGAAACCTTGAACACCTATACCAATTGGACGATGCCTTAAAT 106631 Query 65605 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 65664 | || | | ||||||||| | || ||||| || || ||||| |||||||| |||||| Sbjct 106630 TGGATTTCTTAGCTTCTGGCAAGGGGTAATAGTTGATGTCTATTATTTTATTAAGATTTT 106571 Query 65665 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTA---TTA 65721 | ||| |||| ||||| || | ||| ||||||||| | ||| ||| Sbjct 106570 TAGCAACAGTTTTGGTTACATCTTTTAATTTTTTGAAATCAAATGTTTTTTCTGGTGTTA 106511 Query 65722 CAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 65781 |||||||||| | ||||| || || | ||| ||||| || | ||||| || | | | Sbjct 106510 CAAACATGTTAAGTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATCAGGTGCAGAGT 106451 Query 65782 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 65841 | | | || || || || | |||||| || || || || || | |||||||||||| | Sbjct 106450 ACTCAACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGATTGC 106391 Query 65842 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 65901 ||||| | ||||| | ||||||| |||| ||| |||| |||||||||||| || |||| Sbjct 106390 TCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCAACTTGCGATT 106331 Query 65902 CTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATA-GATTTGTATCTCTTTTCTCT 65959 ||||||| || ||| | ||||| |||| || | | | |||| | | || |||| Sbjct 106330 CTATAATGGCAAACCATAACGACT-GAGCTTTCACTGTTCGATTAGCACGTCC---CTCT 106275 Query 65960 TTCGTATAGTGTATACAA--TCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 66017 | | ||| | | | || | | || || | || |||||||||| | | ||||||| Sbjct 106274 TGCTCATATTTGACATAAAGTTGCTCAAATTTTTCGCCCCAAACATCTTGAAGTCCAGGA 106215 Query 66018 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAG 66076 |||| || ||||||||||||||||| | | | | | ||||| | |||||||| || || Sbjct 106214 CATTTATGTGGACACATCAACGACCAGTTTTCATT-TGCTTCAACCCGTTTCATGAAAAG 106156 Query 66077 ATCAGGAATCCAAAGAGCTATAAATAA-ATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 66135 ||| |||||||| | ||| ||||| || ||| | | || | ||| || ||||| || | Sbjct 106155 ATCGGGAATCCATAAAGC-ATAAAAAAGATCCCGTGCTCGGTTTTCTTCTTTTCCAGTGT 106097 Query 66136 TCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCA 66195 | |||| || || | || | | || ||| ||||||| || || || || || || | Sbjct 106096 TTCTTTTGAGGTCTAAAAATTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAA 106037 Query 66196 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 66255 | ||||| | ||| ||||||||||| | |||| || |||||| | |||| Sbjct 106036 AGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGTGCCACATTATTAAATACTC 105977 Query 66256 TCAACATTGGAA-TAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTT 66314 | | |||||||| |||| ||||| || ||||| || || || | || | | || | Sbjct 105976 TTAGCATTGGAACTAAT-CCATTTGAAGTACCGTTCGTTCCACATATGGAAGTGCCTTTG 105918 Query 66315 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 66374 ||||||||| | || || || ||||| || || ||| || || | ||| ||| Sbjct 105917 GCACGAATACAATGAACATTAAGTCCAATTCCACCCGCTGATTTGGAAATCATTGCACAT 105858 Query 66375 CGTTTTAACGTATCATAGATGCCCTCTATACTATC---ATCCATCATGTTAAGTAGAAAA 66431 ||| | | | | | || || || || ||| || ||| ||| || |||||| Sbjct 105857 TGTTCAACTGATTTAAAAATACCTTCAATTGAATCCGAATTCAT--TGTCAA-AAGAAAA 105801 Query 66432 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 66491 || || | ||| | ||| | || | ||| ||| | || || || || |||||| Sbjct 105800 CATGAGGATAGTTGAGGGCGATTTGTAGCAGCAGCAAAAAGAGTTGGCGAGGCATGCGTA 105741 Query 66492 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGA 66551 || || || |||||||| ||||| || |||| ||||| | ||||| | |||| Sbjct 105740 AAATATCGCTCTGAAAGTAGGTTGTAAGTTTCAACAGCTGCACCAATATCGTCTCCATGA 105681 Query 66552 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 66611 || || | ||||| ||||||| |||||| || || | || | || || |||||| Sbjct 105680 ATACCAAGAGCGACGCGCATTAGCATGTGTTGTGGACGCTCTGCAATTTTCCCATTTATT 105621 Query 66612 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 66671 || | || ||||| || | || ||||| ||||||||||| || || || || Sbjct 105620 TTAAGTAAATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCGAAATCACGA 105561 Query 66672 TCGTAAATAATAACCGAGTT 66691 || ||||||||| | ||||| Sbjct 105560 TCATAAATAATAGCAGAGTT 105541 >seq111 Length=362587 Score = 138 bits (152), Expect = 1e-27 Identities = 351/532 (66%), Gaps = 3/532 (1%) Strand=Plus/Plus Query 36161 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 36220 || || |||||||| ||||| ||||| | | || | |||||||| || || || ||| Sbjct 244663 GCAAAGTCGCAGTGGAGACCTTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCG 244722 Query 36221 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 36280 ||||| ||||||||||| || |||||||| || || ||||| || ||||| ||| Sbjct 244723 GGCATGAGGCCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTGAAGAAGATT 244782 Query 36281 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CACTGTCATG--TATC 36337 ||||| || || ||||||||||||| | ||| || | || | | || | |||| Sbjct 244783 CCTTCCACGGCTGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATATC 244842 Query 36338 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 36397 || | ||||| || ||||| |||||| ||||| ||||| | |||||| || Sbjct 244843 CAGGACAGGGCCCAGTCTGCCTTGCGCTTTACAGCCGGCATGGTCTCAACAGCATTGAAC 244902 Query 36398 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 36457 | |||| || || || | || || ||||| | | || ||||| || Sbjct 244903 AAGTAGTCGCGCTCCTTCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCG 244962 Query 36458 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 36517 || || | ||| || ||||| || || || |||||||| || | ||||| || ||||| Sbjct 244963 GAGTGCACGTTCTCCATGGCAATCTGGAAGCCGTAGAAGCAACGCGCCTCCGTGATCTGC 245022 Query 36518 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 36577 || || || || || || | | ||| || || || || || || ||| || || Sbjct 245023 ACCTCCTGACTGAAGCGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCAGCGAAG 245082 Query 36578 AACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTG 36637 || |||| || || || || || ||||| || || ||| || | Sbjct 245083 AAGGCCAGCACGTGGGAGATGAAGTAGCGCTCGTTGTCGGTCAGACGGGCCCAGTCTGTC 245142 Query 36638 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689 || || |||| |||||| |||||||| ||||| || || || || |||| Sbjct 245143 GCGTCCTTCGATAGATCCACCTCTTCCACAGTCCAGAAGGAGGCTTCGGCCT 245194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658156880445400